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geryan
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covid19_australia_interventions
Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia
MIT License
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Reff tp break apart
#68
AugustHao
closed
2 years ago
0
update aarathy / ruarai changes
#67
geryan
closed
2 years ago
0
update Aarathy and August changes
#66
geryan
closed
2 years ago
0
`dow` or `dow_effect` passed to reff model fit from data
#65
geryan
opened
2 years ago
0
update quarantine_dates
#64
geryan
opened
2 years ago
1
switch immunity effect in TP model instead of vaccine effect
#63
geryan
opened
2 years ago
0
enable fitting Reff only to recent data
#62
geryan
opened
2 years ago
0
update plotting and sampling code for split tp and reff functions
#61
geryan
opened
2 years ago
0
pass TP estimates into reff model
#60
geryan
opened
2 years ago
0
output point estimates of TP model
#59
geryan
opened
2 years ago
1
check function split for TP only and reff model works
#58
geryan
opened
2 years ago
1
separate TP and Reff components into function
#57
geryan
opened
2 years ago
0
update combined effect in fit
#56
geryan
opened
2 years ago
0
Update immunity effect
#55
geryan
closed
2 years ago
0
covidlive weekend fix and convergence related fixes
#54
AugustHao
closed
2 years ago
0
some small changes
#53
AugustHao
closed
2 years ago
0
bunch of minor changes
#52
AugustHao
closed
2 years ago
0
pass `combined_effect_timeseries_full` to reff script
#51
geryan
opened
2 years ago
0
check new delay distributions
#50
geryan
opened
2 years ago
0
differentiate PCR/RAT in incoming data streams and minor plotting adjustment
#49
AugustHao
closed
2 years ago
0
bunch of recent small changes
#48
AugustHao
closed
2 years ago
0
misc changes
#47
AugustHao
closed
2 years ago
0
a few changes to reading/plotting nindss and new omicron TP parameter
#46
AugustHao
closed
2 years ago
0
look at onset dates method
#45
geryan
opened
2 years ago
0
write_reff_sims_novax vaccine time series
#44
geryan
closed
2 years ago
0
Rowwise operation v slow now with linelist so large - can we replace this entirely with CV_SOURCE_INFECTION
#43
geryan
opened
2 years ago
1
fixed broken PoA codes in new NINDSS data
#42
AugustHao
closed
2 years ago
0
Omicron tp jan2022
#41
geryan
closed
2 years ago
0
factor recovery immunity into TP
#40
geryan
closed
2 years ago
1
minor changes in reading linelists
#39
AugustHao
closed
2 years ago
0
changed get_nsw_linelist to handle NA PoA entries and now use NCIMs l…
#38
AugustHao
closed
2 years ago
0
tidy and merge vax effect branch
#37
geryan
closed
2 years ago
0
surveillance indexing
#36
geryan
opened
2 years ago
0
time-varying imputation of onset
#35
geryan
opened
2 years ago
0
quarantine effect
#34
geryan
opened
2 years ago
0
quarantine date imputation quick fix
#33
AugustHao
closed
2 years ago
0
update act data lag with updates to master
#32
geryan
closed
2 years ago
0
call `conmat` in functions
#31
geryan
closed
2 years ago
0
update act_data_lag with vax and ttiq update
#30
geryan
closed
2 years ago
0
Ttiq update nov 2021
#29
geryan
closed
2 years ago
0
update exclusion of VIC in rolling delay calculation?
#28
geryan
closed
2 years ago
1
Vaccination data update nov 2021
#27
geryan
closed
2 years ago
0
back out ttiq effect that should not have been pushed into master
#26
geryan
closed
2 years ago
0
update ttiq with contact matrix update
#25
geryan
closed
2 years ago
0
Update contact matrix transmission nov 2021
#24
geryan
closed
2 years ago
1
update reading new nindss cols
#23
geryan
closed
2 years ago
0
TTIQ incorporate time from quarantine
#22
geryan
closed
2 years ago
1
update with august's changes
#21
geryan
closed
2 years ago
0
bring over earlier ttiq
#20
geryan
closed
2 years ago
0
nndss related functions now expect the 3 new columns
#19
AugustHao
closed
2 years ago
0
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