Are the FOODON terms included in FIDEO out of synch with FOODON?

getbordea / fideo

Repository for the Food Interactions with Drugs Evidence Ontology (FIDEO).

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Are the FOODON terms included in FIDEO out of synch with FOODON? #5

Open eabila opened 2 years ago

eabila commented 2 years ago

While working with FIDEO I noticed a difference between FOODON in FIDEO and FOODON directly.

E.g.: The term "beverage" has the ID obo:FOODON_03301977 in FIDEO, but the same ID is "beverage food product" in FOODON (there is a different "beverage" class in FOODON with the ID obo:FOODON_00003202).

How should inheritance in FIDEO of FOODON be treated? Is it an inconsistency or a design choice?

cmungall commented 1 year ago

FIDEO (and all OBO ontologies) should provide base modules to avoid this highly prevalent problem.

See: https://github.com/INCATools/ontology-development-kit/blob/master/docs/ReleaseArtefacts.md

General intro here: https://oboacademy.github.io/obook/explanation/owl-format-variants/