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getian107 / PRScsx

Cross-population polygenic prediction
MIT License
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coordinate input #30

Closed SheaCheng2000 closed 1 year ago

SheaCheng2000 commented 1 year ago

Hi,

Can I use the coordinate like chr1:224568215:A:C as the input of SUM_STATS_FILE 's SNP row rather than the rsID?
Maybe when I make it consistent with the second row of bim file, it will work?

Thanks!

Shea

getian107 commented 1 year ago

Hi Shea- Currently only rsID works as the SNP identifier because the reference panel was built using rsID. Sorry for any inconvenience.

SheaCheng2000 commented 1 year ago

Hi Tian,

Thanks for your quick response! It's okay and I will use VEP to annotate the rsID.)

Shea