DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
i have adjacent normal sample, so i want to check there is tumor in sample.
so i try using deTiN, but gatk does not support AllelicCNV.
and i try to get AllelicCNV tool and it failed.
Hi,
i have adjacent normal sample, so i want to check there is tumor in sample. so i try using deTiN, but gatk does not support AllelicCNV. and i try to get AllelicCNV tool and it failed.
so how can i run deTiN on this situation?
Best Regards and Happy new year!
Jeongmin