aSCNA segmentation file from Canvas

getzlab / deTiN

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

BSD 3-Clause "New" or "Revised" License

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aSCNA segmentation file from Canvas #38

Open jonStewMitch opened 2 years ago

jonStewMitch commented 2 years ago

Hi,

We use Canvas in our somatic CNA calling workflow. Is it possible to use the output of Canvas to create the aSCNA segmentation file required for detin? In particular, how would tau be calculated?

Thanks for any help provided.