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getzlab
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rnaseqc
Fast, efficient RNA-Seq metrics for quality control and process optimization
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Exon_reads.gct.gz file raw count data are not integer
#88
zhangpicb
closed
2 days ago
4
Unique rate of mapped=1, duplicate rate of mapped=0, estimated library complexity =0 on test_data provided
#87
RnaSeqGal
opened
3 months ago
0
Report both total reads and alignments; version bump
#86
francois-a
closed
4 months ago
0
"Total Reads" misleading, how to get the input read count?
#85
gpertea
opened
7 months ago
2
"Cannot compute median of an empty list" after reducing --gene-length to 1
#84
js72587
opened
1 year ago
0
RNASeqc workflows erroring out (when a sample has no reads mapped?)
#83
matren395
opened
1 year ago
0
Pull 3' bias patch from kachulis/rnaseqc
#82
agraubert
opened
1 year ago
1
So difficult to prepare a gtf for rnaseqc
#81
xiekunwhy
closed
1 year ago
7
Uniquely Mapping Reads are overestimated
#80
Rohit-Satyam
opened
1 year ago
1
More 5'/3' bias edge cases
#79
kachulis
opened
1 year ago
1
Read Length fix
#78
kachulis
closed
1 year ago
3
Faulty estimates of Read Length
#77
karl-az
opened
1 year ago
1
"Expression Profiling Efficiency" description in Metrics.md
#76
paulimer
opened
1 year ago
2
Error when running rnaseqc with non-standard gtf annotation file
#75
magmir71
closed
1 year ago
1
5'/3' bias edge case bugs
#74
kachulis
closed
1 year ago
1
rnaseqc v2.4.2 unable to parse collapsed genes GTF
#73
limrock1
closed
2 years ago
2
install issues
#72
rohan-bareja-turnstone
opened
2 years ago
2
collapse_annotation.py cannot process the gtf file generated by gffread
#71
biozzq
opened
2 years ago
2
How can I generate the figure reflecting the coverage over the gene body?
#70
biozzq
closed
2 years ago
1
mapping quality argument
#69
NomiCentarix
closed
2 years ago
1
Issue with creating a jupyter notebook
#68
NomiCentarix
closed
2 years ago
3
0-counts for all genes
#67
NomiCentarix
closed
2 years ago
3
installation problem
#66
NomiCentarix
closed
2 years ago
1
library type
#65
leungman426
closed
2 years ago
1
Why 3' bias ratio is less than 0.5?
#64
y9c
closed
2 years ago
1
Move testing data out of LFS
#63
agraubert
closed
3 years ago
1
rRNA rate difference in new version.
#62
bishwaG
closed
2 years ago
1
Genes have "0" coverage in sample.coverage.tsv but definitely not 0 in sample.exon_reads.gct
#61
jiaan-yu
opened
3 years ago
2
"Duplicate Reads" metric not calculated, always outputs 0.
#60
kachulis
opened
3 years ago
1
Strand argument clarification
#59
cmatKhan
closed
3 years ago
2
Installation Error
#58
cmatKhan
closed
3 years ago
3
Closed alignment block end coordinate comparison
#57
zeus19900814
opened
3 years ago
1
Cram fixes
#56
agraubert
closed
3 years ago
0
Question about reading BAM file in S3 bucket
#55
gujjas
closed
3 years ago
9
Reverts commit 2bd401e
#54
agraubert
closed
3 years ago
0
Intergenic regions
#53
ramyar1993
closed
3 years ago
1
Begin test of github-action CI
#52
agraubert
closed
3 years ago
0
Is “-strictMode” flag still valid?
#51
YyLu5
closed
3 years ago
3
Cram references STILL not working
#50
agraubert
closed
3 years ago
2
rRNA counts differ
#49
kray02
opened
3 years ago
3
median TPM of gene differs from median TPM of its singleton transcript in GTEx v8
#48
cb4github
closed
3 years ago
2
Collapse.py file
#47
jjyotikataria
closed
2 years ago
6
RNA-seQC output empty
#46
YyLu5
closed
4 years ago
1
Handling of supplementary alignments
#45
porchard
opened
4 years ago
4
Update README.md
#44
joshua-gould
closed
4 years ago
1
Added plotting options
#43
francois-a
closed
4 years ago
0
Issue with make
#42
joshhjang
closed
3 years ago
4
d
#41
agraubert
closed
4 years ago
0
Prepare rnaseqc module
#40
agraubert
closed
4 years ago
1
problem with installation
#39
kac2053
closed
4 years ago
2
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