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getzlab / rnaseqc

Fast, efficient RNA-Seq metrics for quality control and process optimization
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Please consider replacing agutils.status_bar with tqdm #89

Closed lrvdijk closed 3 weeks ago

lrvdijk commented 1 month ago

I am trying to create updated bioconda packages for rnaseqc (see (1) and (2)).

I was also trying to create a separate bioconda recipe for the python utils, as published on PyPI (see (2) above). That package, however, depends on agutil, a package not available on either bioconda or conda-forge.

Since rnaseqc only uses agutil for a progress bar, would it be an idea to instead use the much more widely used library tqdm for that?

I could open a PR if desired.

Thanks!

francois-a commented 3 weeks ago

done.