use BiocManager to install; also example assumes folder existence

gevaertlab / AMARETTO

Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression

Apache License 2.0

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use BiocManager to install; also example assumes folder existence #3

Closed vjcitn closed 5 years ago

vjcitn commented 5 years ago

The AMARETTO.R at https://github.com/gevaertlab/AMARETTO/tree/master/RUNNING_AMARETTO_EXAMPLE

uses devtools::install_github

The BiocManager package can be installed from CRAN. It will resolve dependencies as well as install_github -- BiocManager::install("gevaertlab/AMARETTO")

Also the example has an early setwd("AMARETTO") but that folder may not be present.

ogevaert commented 5 years ago

@vjcitn we are working on the bioconductor submission, and will definitely fix this as well !

jayendrashinde91 commented 5 years ago

@vjcitn @ogevaert this issue has already been addressed. Thank you