gexijin / idepGolem

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network and table download are needed for tab Network #526

Open JianYes opened 1 year ago

JianYes commented 1 year ago

Is your feature request related to a problem? What value do you see this adding? Please describe. image But in idep 1.1, we have no any download option.

Describe the solution you'd like Can we add the options of "download all modules" , "download the selected module", plot of "network for the top genes of the selected module", and the "table of network for the top genes of the selected module". Please make sure that "the selected module" is for whole selected module. Also, add column names for the "table of network for the top genes of the selected module".

Describe alternatives you've considered A clear and concise description of any alternative solutions or features you've considered.

Additional context Here is the screenshot with these two downloads and the table for the top genes of the selected module from demo in idep .96 image Module1. turquoise (495 genes).txt

JianYes commented 9 months ago

There is no download option for network plot and module plot. The "Download network for selected module" option gives the same table as "Download all modules" though the table name is changed as something like "module_2.blue(385 genes).csv". All 985 genes are all still in this table for Mouse 2*2 factor demo dataset, same as the all modules table.

gexijin commented 8 months ago

Download the file for the network that is shown (top 10).