Details for CELLxGENE integration/submission - Githubissues

gf-dcc / docs

Docs written by the Gray Foundation Data Coordinating Center (GF-DCC) that describe the consortium portal, data, metadata, and other topics

https://docs.graybrcaatlas.org

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Details for CELLxGENE integration/submission #65

Open anngvu opened 1 year ago

anngvu commented 1 year ago

There are some basic things that we can reiterate in this step:

What data should look like (usually this is not an issue because processed data is pretty standard format, but doesn't hurt to provide example)
Enough clinical data
The CELLxGENE template that we use
Types of issues encountered in the past
General flow of review and implementation, e.g. Team Data Contributor -> Sage DCC staff -> MSK DCC -> CELLxGENE engineers

How much are we able to support an alternative/branch of the workflow to Broad portal? (need to discuss internally).