gioman
commented
7 years ago @Pbleonard it compiled fine on Ubuntu 16.10. As 16.10 is not a LTR release would be good to have GFlow compilable also on LTR Ubuntu releases, but of course feel free to close this ticket.
Hi, thanks for the updated Readme for Linux. I followed the instructions and changed the Makefile in order to point to the petsc installation folder, in the case of Ubuntu 16.04
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real
When running make beside the warnings also a lot of "too many arguments to function" errors are shown. Any idea of what could be the issue?
Thanks in advance
giovanni@sibirica:~/Desktop/GFlow$ make mpicc -g -Wall -O2 -std=c11 -D_GNU_SOURCE -isystem /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include -c gflow.c -o gflow.o gflow.c: In function ‘parse_args’: gflow.c:80:65: warning: passing argument 4 of ‘PetscOptionsGetString’ makes integer from pointer without a cast [-Wint-conversion] PetscOptionsGetString(PETSC_NULL, NULL, "-habitat", habitat_file, PATH_MAX, &flg); ^ In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0, from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4, from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5, from gflow.c:27: /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘size_t {aka long unsigned int}’ but argument is of type ‘char ’ PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool ); ^ gflow.c:80:83: warning: passing argument 5 of ‘PetscOptionsGetString’ makes pointer from integer without a cast [-Wint-conversion] PetscOptionsGetString(PETSC_NULL, NULL, "-habitat", habitat_file, PATH_MAX, &flg); ^ In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0, from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4, from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5, from gflow.c:27: /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘int’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:80:4: error: too many arguments to function ‘PetscOptionsGetString’
PetscOptionsGetString(PETSC_NULL, NULL, "-habitat", habitat_file, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:81:65: warning: passing argument 4 of ‘PetscOptionsGetString’ makes integer from pointer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-nodes", node_file, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘size_t {aka long unsigned int}’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:81:83: warning: passing argument 5 of ‘PetscOptionsGetString’ makes pointer from integer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-nodes", node_file, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘int’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:81:4: error: too many arguments to function ‘PetscOptionsGetString’
PetscOptionsGetString(PETSC_NULL, NULL, "-nodes", node_file, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:82:65: warning: passing argument 4 of ‘PetscOptionsGetString’ makes integer from pointer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-node_pairs", node_pair_file, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘size_t {aka long unsigned int}’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:82:83: warning: passing argument 5 of ‘PetscOptionsGetString’ makes pointer from integer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-node_pairs", node_pair_file, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘int’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:82:4: error: too many arguments to function ‘PetscOptionsGetString’
PetscOptionsGetString(PETSC_NULL, NULL, "-node_pairs", node_pair_file, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:83:65: warning: passing argument 4 of ‘PetscOptionsGetString’ makes integer from pointer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-output_directory", output_directory, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘size_t {aka long unsigned int}’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:83:83: warning: passing argument 5 of ‘PetscOptionsGetString’ makes pointer from integer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-output_directory", output_directory, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘int’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:83:4: error: too many arguments to function ‘PetscOptionsGetString’
PetscOptionsGetString(PETSC_NULL, NULL, "-output_directory", output_directory, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:84:65: warning: passing argument 4 of ‘PetscOptionsGetString’ makes integer from pointer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-output_prefix", output_prefix, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘size_t {aka long unsigned int}’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:84:83: warning: passing argument 5 of ‘PetscOptionsGetString’ makes pointer from integer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-output_prefix", output_prefix, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘int’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:84:4: error: too many arguments to function ‘PetscOptionsGetString’
PetscOptionsGetString(PETSC_NULL, NULL, "-output_prefix", output_prefix, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:85:44: warning: passing argument 3 of ‘PetscOptionsGetReal’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetReal(PETSC_NULL, NULL, "-output_threshold",&output_threshold, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:12:29: note: expected ‘PetscReal {aka double }’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetReal(const char[],const char[],PetscReal ,PetscBool );
^
gflow.c:85:64: warning: passing argument 4 of ‘PetscOptionsGetReal’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetReal(PETSC_NULL, NULL, "-output_threshold",&output_threshold, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:12:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘double ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetReal(const char[],const char[],PetscReal ,PetscBool );
^
gflow.c:85:4: error: too many arguments to function ‘PetscOptionsGetReal’
PetscOptionsGetReal(PETSC_NULL, NULL, "-output_threshold",&output_threshold, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:12:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetReal(const char[],const char[],PetscReal ,PetscBool );
^
gflow.c:86:72: warning: passing argument 4 of ‘PetscOptionsGetString’ makes integer from pointer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-effective_resistance", reff_path, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘size_t {aka long unsigned int}’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:86:86: warning: passing argument 5 of ‘PetscOptionsGetString’ makes pointer from integer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-effective_resistance", reff_path, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘int’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:86:4: error: too many arguments to function ‘PetscOptionsGetString’
PetscOptionsGetString(PETSC_NULL, NULL, "-effective_resistance", reff_path, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:87:44: warning: passing argument 3 of ‘PetscOptionsGetBool’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetBool(PETSC_NULL, NULL, "-use_mpi_io", &use_mpiio, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:11:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetBool(const char[],const char [],PetscBool ,PetscBool );
^
gflow.c:87:4: error: too many arguments to function ‘PetscOptionsGetBool’
PetscOptionsGetBool(PETSC_NULL, NULL, "-use_mpi_io", &use_mpiio, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:11:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetBool(const char[],const char [],PetscBool ,PetscBool );
^
gflow.c:88:44: warning: passing argument 3 of ‘PetscOptionsGetBool’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetBool(PETSC_NULL, NULL, "-output_final_current_only", &output_final_current_only, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:11:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetBool(const char[],const char [],PetscBool ,PetscBool );
^
gflow.c:88:4: error: too many arguments to function ‘PetscOptionsGetBool’
PetscOptionsGetBool(PETSC_NULL, NULL, "-output_final_current_only", &output_final_current_only, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:11:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetBool(const char[],const char [],PetscBool ,PetscBool );
^
gflow.c:89:44: warning: passing argument 3 of ‘PetscOptionsGetReal’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetReal(PETSC_NULL, NULL, "-max_distance", &max_distance, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:12:29: note: expected ‘PetscReal {aka double }’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetReal(const char[],const char[],PetscReal ,PetscBool );
^
gflow.c:89:64: warning: passing argument 4 of ‘PetscOptionsGetReal’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetReal(PETSC_NULL, NULL, "-max_distance", &max_distance, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:12:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘PetscReal {aka double }’
PETSC_EXTERN PetscErrorCode PetscOptionsGetReal(const char[],const char[],PetscReal ,PetscBool );
^
gflow.c:89:4: error: too many arguments to function ‘PetscOptionsGetReal’
PetscOptionsGetReal(PETSC_NULL, NULL, "-max_distance", &max_distance, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:12:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetReal(const char[],const char[],PetscReal ,PetscBool );
^
gflow.c:90:44: warning: passing argument 3 of ‘PetscOptionsGetBool’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetBool(PETSC_NULL, NULL, "-nearest_first", &nearest_first, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:11:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetBool(const char[],const char [],PetscBool ,PetscBool );
^
gflow.c:90:4: error: too many arguments to function ‘PetscOptionsGetBool’
PetscOptionsGetBool(PETSC_NULL, NULL, "-nearest_first", &nearest_first, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:11:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetBool(const char[],const char [],PetscBool ,PetscBool );
^
gflow.c:91:44: warning: passing argument 3 of ‘PetscOptionsGetBool’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetBool(PETSC_NULL, NULL, "-furthest_first", &furthest_first, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:11:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetBool(const char[],const char [],PetscBool ,PetscBool );
^
gflow.c:91:4: error: too many arguments to function ‘PetscOptionsGetBool’
PetscOptionsGetBool(PETSC_NULL, NULL, "-furthest_first", &furthest_first, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:11:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetBool(const char[],const char [],PetscBool ,PetscBool );
^
gflow.c:92:43: warning: passing argument 3 of ‘PetscOptionsGetInt’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetInt(PETSC_NULL, NULL, "-shuffle_node_pairs", &shuffle_node_pairs, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:10:29: note: expected ‘PetscInt {aka int }’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetInt(const char[],const char [],PetscInt ,PetscBool );
^
gflow.c:92:67: warning: passing argument 4 of ‘PetscOptionsGetInt’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetInt(PETSC_NULL, NULL, "-shuffle_node_pairs", &shuffle_node_pairs, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:10:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘PetscInt {aka int }’
PETSC_EXTERN PetscErrorCode PetscOptionsGetInt(const char[],const char [],PetscInt ,PetscBool );
^
gflow.c:92:4: error: too many arguments to function ‘PetscOptionsGetInt’
PetscOptionsGetInt(PETSC_NULL, NULL, "-shuffle_node_pairs", &shuffle_node_pairs, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:10:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetInt(const char[],const char [],PetscInt ,PetscBool );
^
gflow.c:93:65: warning: passing argument 4 of ‘PetscOptionsGetString’ makes integer from pointer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-converge_at", convergence, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘size_t {aka long unsigned int}’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:93:78: warning: passing argument 5 of ‘PetscOptionsGetString’ makes pointer from integer without a cast [-Wint-conversion]
PetscOptionsGetString(PETSC_NULL, NULL, "-converge_at", convergence, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘int’
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:93:4: error: too many arguments to function ‘PetscOptionsGetString’
PetscOptionsGetString(PETSC_NULL, NULL, "-converge_at", convergence, PATH_MAX, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:18:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetString(const char[],const char[],char[],size_t,PetscBool );
^
gflow.c:94:44: warning: passing argument 3 of ‘PetscOptionsGetEList’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetEList(PETSC_NULL, NULL, "-output_format",
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:20:29: note: expected ‘const char const’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetEList(const char[],const char[],const charconst,PetscInt,PetscInt,PetscBool *);
^
gflow.c:95:38: warning: passing argument 4 of ‘PetscOptionsGetEList’ makes integer from pointer without a cast [-Wint-conversion]
output_formats, 3, &output_format, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:20:29: note: expected ‘PetscInt {aka int}’ but argument is of type ‘const char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetEList(const char[],const char[],const charconst,PetscInt,PetscInt,PetscBool );
^
gflow.c:95:54: warning: passing argument 5 of ‘PetscOptionsGetEList’ makes pointer from integer without a cast [-Wint-conversion]
output_formats, 3, &output_format, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:20:29: note: expected ‘PetscInt {aka int }’ but argument is of type ‘int’
PETSC_EXTERN PetscErrorCode PetscOptionsGetEList(const char[],const char[],const charconst,PetscInt,PetscInt,PetscBool );
^
gflow.c:95:58: warning: passing argument 6 of ‘PetscOptionsGetEList’ from incompatible pointer type [-Wincompatible-pointer-types]
output_formats, 3, &output_format, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:20:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘int ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetEList(const char[],const char[],const charconst,PetscInt,PetscInt,PetscBool );
^
gflow.c:94:4: error: too many arguments to function ‘PetscOptionsGetEList’
PetscOptionsGetEList(PETSC_NULL, NULL, "-output_format",
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:20:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetEList(const char[],const char[],const charconst,PetscInt,PetscInt,PetscBool );
^
gflow.c: In function ‘init_node_pair_sequence’:
gflow.c:164:46: warning: passing argument 3 of ‘PetscOptionsGetIntArray’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetIntArray(PETSC_NULL, NULL, "-range", nps->seq, &nps->count, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:14:29: note: expected ‘PetscInt {aka int }’ but argument is of type ‘char ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetIntArray(const char[],const char[],PetscInt[],PetscInt ,PetscBool );
^
gflow.c:164:66: warning: passing argument 5 of ‘PetscOptionsGetIntArray’ from incompatible pointer type [-Wincompatible-pointer-types]
PetscOptionsGetIntArray(PETSC_NULL, NULL, "-range", nps->seq, &nps->count, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:14:29: note: expected ‘PetscBool {aka enum }’ but argument is of type ‘int ’
PETSC_EXTERN PetscErrorCode PetscOptionsGetIntArray(const char[],const char[],PetscInt[],PetscInt ,PetscBool );
^
gflow.c:164:4: error: too many arguments to function ‘PetscOptionsGetIntArray’
PetscOptionsGetIntArray(PETSC_NULL, NULL, "-range", nps->seq, &nps->count, &flg);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:14:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsGetIntArray(const char[],const char[],PetscInt[],PetscInt ,PetscBool );
^
gflow.c: In function ‘update_matrix’:
gflow.c:220:18: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=]
message("Infinite value found. R[%zu][%zu] = %lf; R[%llu][%llu] = %lf\n", i, j, val1, i+a, j+b, val2);
^
gflow.c:220:18: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘long unsigned int’ [-Wformat=]
gflow.c: In function ‘main’:
gflow.c:542:4: error: too many arguments to function ‘PetscOptionsInsertString’
PetscOptionsInsertString(NULL, common_options);
^
In file included from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscsys.h:1643:0,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscbag.h:4,
from /usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petsc.h:5,
from gflow.c:27:
/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/include/petscoptions.h:40:29: note: declared here
PETSC_EXTERN PetscErrorCode PetscOptionsInsertString(const char[]);
^
gflow.c: In function ‘parse_args’:
gflow.c:112:7: warning: ignoring return value of ‘truncate’, declared with attribute warn_unused_result [-Wunused-result]
truncate(reff_path, 0); / Empty the file now, we'll have to repoen and append to it every iteration /
^
Makefile:12: recipe for target 'gflow.o' failed
make: [gflow.o] Error 1