Sourcery Code Quality Report

✅ Merging this PR will increase code quality in the affected files by 1.06%.

Quality metrics	Before	After	Change
Complexity	13.59 🙂	12.77 🙂	-0.82 👍
Method Length	151.93 😞	140.24 😞	-11.69 👍
Working memory	13.92 😞	14.05 😞	0.13 👎
Quality	43.02% 😞	44.08% 😞	1.06% 👍

Other metrics	Before	After	Change
Lines	10218	8230	-1988

Changed files	Quality Before	Quality After	Quality Change
pygpseq/init.py	94.68% ⭐	93.52% ⭐	-1.16% 👎
pygpseq/const.py	65.45% 🙂	65.29% 🙂	-0.16% 👎
pygpseq/anim/init.py	97.67% ⭐	97.67% ⭐	0.00%
pygpseq/anim/analysis.py	45.75% 😞	45.80% 😞	0.05% 👍
pygpseq/anim/condition.py	36.49% 😞	39.48% 😞	2.99% 👍
pygpseq/anim/main.py	32.63% 😞	35.38% 😞	2.75% 👍
pygpseq/anim/nucleus.py	43.95% 😞	42.97% 😞	-0.98% 👎
pygpseq/anim/series.py	45.76% 😞	46.16% 😞	0.40% 👍
pygpseq/fish/init.py	99.33% ⭐	99.33% ⭐	0.00%
pygpseq/fish/dot.py	38.56% 😞	38.91% 😞	0.35% 👍
pygpseq/fish/image.py	6.97% ⛔	7.33% ⛔	0.36% 👍
pygpseq/fish/nucleus.py	23.10% ⛔	23.10% ⛔	0.00%
pygpseq/tools/init.py	87.52% ⭐	87.52% ⭐	0.00%
pygpseq/tools/binarize.py	59.93% 🙂	61.09% 🙂	1.16% 👍
pygpseq/tools/chromab.py	51.45% 🙂	51.45% 🙂	0.00%
pygpseq/tools/distance.py	72.79% 🙂	72.10% 🙂	-0.69% 👎
pygpseq/tools/image.py	68.59% 🙂	69.66% 🙂	1.07% 👍
pygpseq/tools/io.py	67.17% 🙂	66.18% 🙂	-0.99% 👎
pygpseq/tools/path.py	74.86% 🙂	77.74% ⭐	2.88% 👍
pygpseq/tools/plot.py	31.21% 😞	32.28% 😞	1.07% 👍
pygpseq/tools/stat.py	56.30% 🙂	56.56% 🙂	0.26% 👍
pygpseq/tools/string.py	90.81% ⭐	90.81% ⭐	0.00%
pygpseq/tools/vector.py	78.45% ⭐	79.04% ⭐	0.59% 👍

Here are some functions in these files that still need a tune-up:

File	Function	Complexity	Length	Working Memory	Quality	Recommendation
pygpseq/fish/image.py	analyze_field_of_view	36 ⛔	745 ⛔	35 ⛔	7.33% ⛔	Refactor to reduce nesting. Try splitting into smaller methods. Extract out complex expressions
pygpseq/anim/series.py	Series.find_nuclei	36 ⛔	677 ⛔	19 ⛔	11.76% ⛔	Refactor to reduce nesting. Try splitting into smaller methods. Extract out complex expressions
pygpseq/anim/main.py	Main.run	45 ⛔	814 ⛔	14 😞	14.01% ⛔	Refactor to reduce nesting. Try splitting into smaller methods. Extract out complex expressions
pygpseq/tools/plot.py	dots_in_ellipsoid	26 😞	687 ⛔	22 ⛔	14.70% ⛔	Refactor to reduce nesting. Try splitting into smaller methods. Extract out complex expressions
pygpseq/fish/nucleus.py	annotate_compartments	20 😞	1263 ⛔	32 ⛔	16.07% ⛔	Refactor to reduce nesting. Try splitting into smaller methods. Extract out complex expressions

Legend and Explanation

The emojis denote the absolute quality of the code:

The 👍 and 👎 indicate whether the quality has improved or gotten worse with this pull request.

Please see our documentation here for details on how these metrics are calculated.

We are actively working on this report - lots more documentation and extra metrics to come!

Help us improve this quality report!