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ggloor / ALDEx2_dev

ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test
GNU Affero General Public License v3.0
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ALDEx2_1.16.0 output of aldex.corr may have a mistake #12

Closed daichi-fujii closed 5 years ago

daichi-fujii commented 5 years ago

Hello

Output of aldex.corr function has column r . However, the contents of the column is "t statistics" of cor.test function, and it should be "r estimate".

So, code of aldex.corr should be changed as follows. from r <- sapply(cors, getElement, "statistic") to r <- sapply(cors, getElement, "estimate")

daichi

ggloor commented 5 years ago

thank you. will be fixed and pushed to bioconductor