how to calculate the fold-change in ALDEx2?

ggloor / ALDEx2_dev

ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test

GNU Affero General Public License v3.0

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Closed zhq90 closed 1 year ago

zhq90 commented 1 year ago

I wonder to know how to calculate the fold-change in ALDEx2? Can the output diff.btw value tell me the fold-change between two group?

ggloor commented 1 year ago

yes

diff.btw is log2 fold difference diff.win is log2 variance effect is the ratio of the two

Greg