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ggloor / ALDEx_bioc

ALDEx_bioc is the working directory for updating bioconductor
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BiocParallel error in clr_effect.r #19

Closed jmmack closed 4 years ago

jmmack commented 5 years ago

x.effect <- aldex.effect(x, conds, include.sample.summary=TRUE, verbose=TRUE)

Error in "BiocParallel" %in% rownames(installed.packages()) & useMC : operations are possible only for numeric, logical or complex types

louellette commented 4 years ago

I hit this issue also. Do I have something misconfigured? My same code runs fine on my laptop. I just finished upgrading the server R and installing all the required packages there, so I'm running different versions. See attached. BiocParallel error.txt

ggloor commented 4 years ago

fixed and pushed to the development version. This can be downloaded from the ALDEx_bioc master branch, or from https://www.bioconductor.org/packages/devel/bioc/html/ALDEx2.html. Make sure the version is 1.19.2