Opening a bug report for the ALDEx2 (ALDEx_bioc) GLM function in R 3.5.1. Error:
R version 3.5.1 (2018-07-02)
Error in coerce.data(reads, conds) :
mismatch between number of samples and condition vector
Calls: aldex.clr -> aldex.clr -> aldex.clr.function -> coerce.data
The exact code used with R 3.5.1 is:
data(selex)
covariates <- data.frame("A" = sample(0:1, 14, replace = TRUE),"B" = c(rep(0, 7), rep(1, 7)))
mm <- model.matrix(~ A + B, covariates)
x <- aldex.clr(selex, mm, mc.samples=1, denom="all")
Error location — ALDEx2 clr_function.r:
if(ncol(reads) != length(conds) & !is(conds, "matrix")){
print(length(conds))
print(ncol(reads))
stop("mismatch between number of samples and condition vector")
}
ggloor
commented
2 years ago
Opening a bug report for the ALDEx2 (ALDEx_bioc) GLM function in R 3.5.1. Error:
The exact code used with R 3.5.1 is:
Error location — ALDEx2 clr_function.r: