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gglyptodon / helixer-docker

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debug, when use the container via singularity-ce #8

Open Jiangjiangzhang6 opened 4 months ago

Jiangjiangzhang6 commented 4 months ago

hello I run the helixer when use the singularity, the command was "srun -p gpu-3090 /public/software/singularity-ce-3.11.3/bin/singularity run --nv helixer-docker_helixer_v0.3.3_cuda_11.8.0-cudnn8.sif Helixer.py --fasta-path /public/agis/yanjianbin_group/baishaoxing/Maidenhair_fern/GCA_014529385.2_ASM1452938v2_genomic.fna.gz --lineage land_plant --gff-output-path GCA_014529385.2_ASM1452938v2_genomic.helixer.gff3" but its error image image image how could I debug , thank you

Eden-yike commented 3 months ago

hello I run the helixer when use the singularity, the command was "srun -p gpu-3090 /public/software/singularity-ce-3.11.3/bin/singularity run --nv helixer-docker_helixer_v0.3.3_cuda_11.8.0-cudnn8.sif Helixer.py --fasta-path /public/agis/yanjianbin_group/baishaoxing/Maidenhair_fern/GCA_014529385.2_ASM1452938v2_genomic.fna.gz --lineage land_plant --gff-output-path GCA_014529385.2_ASM1452938v2_genomic.helixer.gff3" but its error image image image how could I debug , thank you

HI, i also met the same probelm. if this problem has been solved