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ggonnella
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gfapy
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
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gfapy.error.NotFoundError: A link equivalent to ... does not exist
#31
MrTomRod
opened
2 months ago
1
Update integer.py to parse integers in exp notation
#30
msgr0
opened
7 months ago
1
Missing coverage information after merge_linear_paths()
#29
jamiemcg
opened
1 year ago
0
Improve documentation on Methods to access segments, edges, etc. by id
#28
nhansen
opened
1 year ago
7
unhashable type: 'SegmentEnd' with `is_cut_segment`
#27
mir-cat
opened
2 years ago
0
Feature: converting graphs to GFA
#26
aafshinfard
opened
2 years ago
1
Optimization: add ability to ignore sequences when loading a GFA file
#25
fedarko
opened
2 years ago
6
Setting 'or' tag in merge_linear_paths
#24
W-L
opened
2 years ago
1
Taking very long to load GFA1 from file
#23
fawaz-dabbaghieh
closed
2 years ago
4
'edge_1+' is not a valid list of GFA1 segment names and orientations
#22
schorlton
closed
2 years ago
7
Merging on linear paths errors
#21
AntoineHo
closed
2 years ago
1
Merging linear paths : computed sequence length and computed LN differ
#20
AntoineHo
closed
3 years ago
2
conversion between GFA and GFA2 leaves out path tags
#19
egoltsman
closed
3 years ago
1
Possible bug in captured_path.py
#18
egoltsman
closed
3 years ago
4
Added support for Linux on power
#17
ujjwalsh
closed
3 years ago
1
python3 set.append not allowed
#16
egoltsman
closed
4 years ago
1
linear_path error
#15
egoltsman
closed
4 years ago
3
validating paths
#14
egoltsman
closed
4 years ago
5
gfapy.error.FormatError: Custom tags must be lower case
#13
Zethson
closed
4 years ago
5
Installation issue on Ubuntu 20.04
#12
moldach
closed
4 years ago
2
Supporting rGFA
#11
ggonnella
closed
3 years ago
13
Calling .complement() on GFA2 edges
#10
fedarko
closed
3 years ago
3
Compact the assembly graph [feature request]
#9
sjackman
closed
3 years ago
1
Add bin/gfapy-renumber
#8
sjackman
closed
4 years ago
0
Fill in the sequences in GFA from FASTA
#7
sjackman
closed
3 years ago
8
Fix typos
#6
jwilk
closed
6 years ago
0
gfa-convert: custom sl:i tag ought to be LN:i
#5
sjackman
closed
7 years ago
5
gfapy-convert: has no identifier Path conversion to GFA2 failed
#4
sjackman
closed
7 years ago
2
gfapy-validate: spurious warning (GFA 1)
#3
sjackman
closed
7 years ago
2
ImportError: cannot import name '_validate_gfa_field'
#2
sjackman
closed
7 years ago
4
Minimum Python version
#1
sjackman
closed
7 years ago
2