ggonnella / gfaviz

Graphical interactive tool for the visualization of sequence graphs in GFA format.
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Robustness of OGDF's layout algorithms #40

Open niehus opened 6 years ago

niehus commented 6 years ago

The used layouting algorithms from OGDF tend to crash or fall into endless loops on certain edge cases. For example the testfile loop.gfa from pyGFA broke the StressMinimization algorithm. Current workaround is this line in viznode.cpp: weight = max(weight, 1.2); //fix for loop.gfa