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ggonnella / gfaviz

Graphical interactive tool for the visualization of sequence graphs in GFA format.
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Node length with the FMMM Layout #44

Closed ggonnella closed 6 years ago

ggonnella commented 6 years ago

We mentioned today in the meeting, that the node length with one of the two layouts is not implemented completely. If I remember this is the FMMM layout? We have to find a way to fix this.

niehus commented 6 years ago

This patch results in the fmmm-Layout using the edgeLengths-array. Default Edgelengths could still use some tweaking I guess. Also the fmmm-Layout follows the EdgeLengths more strictly than SM does with the weights, so internal-edges tend to break the layout more often. fmmm-patch.txt

ggonnella commented 6 years ago

Patch is applied, but I think it's not working

ggonnella commented 6 years ago

Probably the changes I made in the patch does not make it work. (to check: line setting length)

ggonnella commented 6 years ago

Introduced layout specific multipliers to fix this.