glasser_3d atlas - Githubissues

ggseg / ggseg3d

ggseg3d R package for cisualising brain atlases through plotly

https://ggseg.github.io/ggseg3d/

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glasser_3d atlas #7

Closed AthinaRA closed 3 years ago

AthinaRA commented 3 years ago

I am just getting acquainted with ggseg3d. However I am having issue getting it to work with the glasser_3d atlas.

Running the below I am not seeing parcellated 3d regions - only a glass brain. I have loaded the ggsegGlasser atlas ie could view the glasser_3d tibble. Any idea what the issue could be ? Pls and thank you - Athina.

ggseg3d(atlas = glasser_3d, surface = "LCBC", hemisphere = c("left","right")) %>% add_glassbrain()

drmowinckels commented 3 years ago

The glasser atlas is a cortical atlas, and should not be paired with a glass brain.

You should see the atlas just fine if you remove it, as it is overplotting the actual atlas.

library(ggseg3d)
library(ggsegGlasser)

ggseg3d(atlas = glasser_3d,
        surface = "LCBC",
        hemisphere = c("left","right"))

AthinaRA commented 3 years ago

Thank you - worked perfectly !