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gher-uliege / Diva-Workshops

Code, data and instructions for the Diva workshops
https://gher-uliege.github.io/Diva-Workshops/
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CI not working with macOS-latest - x64 #25

Open ctroupin opened 7 hours ago

ctroupin commented 7 hours ago

It looks like jupyter and nbconvert are not found with macOS.

...
/opt/homebrew/opt/python@3.13/bin/python3.13: No module named jupyter
JULIA_VERSION 1.11.1 1.11
/Users/runner/work/Diva-Workshops/Diva-Workshops/utils/../notebooks/1-Intro/01-notebooks-basics.ipynb 1.11.1
/opt/homebrew/opt/python@3.13/bin/python3.13: No module named nbconvert
 failed
...

while it works for Windows and Ubuntu.

Alexander-Barth commented 2 hours ago

I think this is related to this message before:

× This environment is externally managed
╰─> To install Python packages system-wide, try brew install
    xyz, where xyz is the package you are trying to
    install.

    If you wish to install a Python library that isn't in Homebrew,
    use a virtual environment:

    python3 -m venv path/to/venv
    source path/to/venv/bin/activate
    python3 -m pip install xyz

    If you wish to install a Python application that isn't in Homebrew,
    it may be easiest to use 'pipx install xyz', which will manage a
    virtual environment for you. You can install pipx with

    brew install pipx

    You may restore the old behavior of pip by passing
    the '--break-system-packages' flag to pip, or by adding
    'break-system-packages = true' to your pip.conf file. The latter
    will permanently disable this error.

    If you disable this error, we STRONGLY recommend that you additionally
    pass the '--user' flag to pip, or set 'user = true' in your pip.conf
    file. Failure to do this can result in a broken Homebrew installation.

    Read more about this behavior here: <https://peps.python.org/pep-0668/>

note: If you believe this is a mistake, please contact your Python installation or OS distribution provider. You can override this, at the risk of breaking your Python installation or OS, by passing --break-system-packages.
hint: See PEP 668 for the detailed specification.
ctroupin commented 32 minutes ago

Yes, certainly! I'll follow a short tutorial now on Github actions because I don't know how to install stuff like that 😀