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ghm17 / LOGODetect

LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
GNU General Public License v3.0
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Error in checkForRemoteErrors(val) : one node produced an error: missing value where TRUE/FALSE needed #15

Closed lalagkaspn closed 2 years ago

lalagkaspn commented 2 years ago

Hi all,

I am trying to run LOGODetect on a cluster for a single population (EUR). However, when I run the Rscript, I get this error message: "Error in checkForRemoteErrors(val) : one node produced an error: missing value where TRUE/FALSE needed" and I do not understand why. Do you have any thoughts on this? Thank you!

Versions: R: 4.2.1 snowfall: 1.84.6.2 data.table: 1.14.2 opt.parse: 1.7.3 BEDMatrix: 2.0.3

ghm17 commented 2 years ago

Could you provide the input data so that I can help to debug? Thank you.

lalagkaspn commented 2 years ago

I finally made it run. One parameter was misspecified in my cluster. Thank you for your time!