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ghm17 / LOGODetect

LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
GNU General Public License v3.0
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The process was killed #16

Closed sherryfan030 closed 1 year ago

sherryfan030 commented 1 year ago

Hi, Thank you for providing a great software.

I performed LOGODetect forthe EUR population, but I get two warning messages:"In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory" and "In searchCommandline(parallel, cpus = cpus, type = type, socketHosts = socketHosts, :Unknown option on commandline: --file". And finally my process was killed. Any suggestions?

My log file have been uploaded. new 1.txt

System：Ubuntu 20.04 R: 4.2.1 snowfall: 1.84.6.2 data.table: 1.14.2 opt.parse: 1.7.3 BEDMatrix: 2.0.3

Thanks!

ghm17 commented 1 year ago

Hi. The software is run parallelly on 20 CPUs by default and requires much memory. I guess it is the insufficient computational resources that cause the cluster to kill the process. You can try adding a flag --n_cores 2 to see if the error still shows up.