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giabaio / survHE

Survival analysis in health economic evaluation Contains a suite of functions to systematise the workflow involving survival analysis in health economic evaluation. survHE can fit a large range of survival models using both a frequentist approach (by calling the R package flexsurv) and a Bayesian perspective.
https://gianluca.statistica.it/software/survhe/
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installation fails #1

Closed lemna closed 7 years ago

lemna commented 7 years ago

Hi,

installation using devtools fails:

devtools::install_github("giabaio/survHE") Error: Line starting '<<<<<<< HEAD ...' is malformed!

This is with the latest github version of devtools:

sessionInfo() R version 3.3.2 (2016-10-31) Platform: i386-w64-mingw32/i386 (32-bit) Running under: Windows 7 (build 7601) Service Pack 1

locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] httr_1.2.1 R6_2.2.0 tools_3.3.2 withr_1.0.2 curl_2.2
[6] memoise_1.0.0 knitr_1.15.1 git2r_0.16.0 digest_0.6.10 devtools_1.12.0.9000

Any suggestions?

Thanks Peter.

giabaio commented 7 years ago

OK --- not sure what's going on. I think this may have to do with encoding, possibly of the DESCRIPTION file. I'll investigate further and try and sort this out asap! The package installs successfully under Linux --- I'll check under Mac OS too. I think somebody else has managed to install it in Windows. I'll try and check that too.

giabaio commented 7 years ago

Peter, Can you please try again now? I think the DESCRIPTION file got accidentally tampered with and there was some extra text, which shouldn't have...

Please let me know if now it works! Gianluca

Gianluca Baio

Reader in Statistics & Health Economics Department of Statistical Science University College London 1-19 Torrington Place, London WC1E 6BT, UK Telephone +44(0)20 7679 1248 (internal: 41248) Fax +44 (0)20 7383 4703 Website: http://www.homepages.ucl.ac.uk/~ucakgba http://www.homepages.ucl.ac.uk/~ucakgba/ Blog: http://gianlubaio.blogspot.co.uk

On 16 December 2016 at 14:10, lemna notifications@github.com wrote:

Hi,

installation using devtools fails:

devtools::install_github("giabaio/survHE") Error: Line starting '<<<<<<< HEAD ...' is malformed!

This is with the latest github version of devtools:

sessionInfo() R version 3.3.2 (2016-10-31) Platform: i386-w64-mingw32/i386 (32-bit) Running under: Windows 7 (build 7601) Service Pack 1

locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] httr_1.2.1 R6_2.2.0 tools_3.3.2 withr_1.0.2 curl_2.2 [6] memoise_1.0.0 knitr_1.15.1 git2r_0.16.0 digest_0.6.10 devtools_1.12.0.9000

Any suggestions?

Thanks Peter.

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lemna commented 7 years ago

Yes, it works now. I managed to install it and run <example(fit.models)> successfully.

You might want to list multcomp, polspline and SparseM as dependencies - I can do a PR if you'd like.

Thanks for fixing! Peter.

giabaio commented 7 years ago

Thanks Peter --- glad it works now! Let me know if you find any other issue... As for the other dependencies, yes please!

G