MONAI-based fetal brain segmentation pipeline

gift-surg / NiftyMIC

NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.

BSD 3-Clause "New" or "Revised" License

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MONAI-based fetal brain segmentation pipeline #11

Closed martaranzini closed 3 years ago

martaranzini commented 4 years ago

A new sub-module will be included in the package to perform the automated segmentation of brain in fetal MRI. This module will be developed using the MONAI framework (https://monai.io/) and will provide:

[ ] A new pretrained model that improves the performance of the currently used one
[ ] The associated python script to run inference with the provided model
[ ] Utilities to (re-)train the segmentation model to ease the introduction and use of model updates within the package.

renbem commented 3 years ago

Part of NiftyMIC v0.8 since f4432f18f02de55f1f61265d83219566dccf655c