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gigascience / gigadb-website

Source code for running GigaDB
http://gigadb.org
GNU General Public License v3.0
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BUSCO plot /viewer E613 #430

Open only1chunts opened 4 years ago

only1chunts commented 4 years ago

User Story

AS a website user I want to add a visual interpretation of genome completeness to relevant datasets So that it is easy to see the BUSCO genome completeness scores

Acceptance criteria

Given I am looking at a dataset which contains BUSCO results When I view/hoverover the file and/or sample containing the BUSCO summary results Then I am presented with a simple bar-chart showing the completeness scores

Is your feature request related to a problem? Please describe. another tool that might be good to have in gigaDB for the BUSCO data https://busco.ezlab.org/busco_userguide.html#plot

Describe the solution you'd like the BUSCO plot tool appears to just create a basic boring bar chart of results, so not particularly interactive, but would perhaps be useful anyway.

Additional context If nothing else it would be nice to have as the thumbnail image for BUSCO files in the new file browser #66 .

This Story is part of Epic #613

rgaiacs commented 2 years ago

the BUSCO plot tool appears to just create a basic boring bar chart of results, so not particularly interactive, but would perhaps be useful anyway.

What type of interactivity are you looking? Their description says

The scripts/generate_plot.py uses R (https://www.r-project.org/) and ggplot2 (http://ggplot2.org/) to summarise BUSCO runs for side-by-side comparisons.

Plotly provide a library to automatically convert ggplot2 to interactive plotly charts.