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gigascience / gigadb-website

Source code for running GigaDB
http://gigadb.org
GNU General Public License v3.0
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Cell Ranger - Embeddable Views #530

Open ChrisArmit opened 3 years ago

ChrisArmit commented 3 years ago

Is your feature request related to a problem? Please describe. Embeddable views of Cell Ranger HTML summary page on GigaDB. Cell Ranger is a set of analysis pipelines developed by 10X Genomics that process single-cell RNA-seq output. The Cell Ranger HTML page is a summary of the alignments, and also the clusters defined from gene expression analysis.

Describe the solution you'd like The option to add these HTML files as embeddable views to the GigaDB dataset page. This would use a widget as a wrapper for the URL link.

Describe alternatives you've considered A thumbnail image as a link to a Cell Ranger HTML summary page could also work.

Additional context Similar issue to MultiQC #431 and BlobTools #387 .

ChrisArmit commented 3 years ago

Example Cell Ranger HTML file from dataset 100836 (SoupX) web_summary.html.zip