gilienv / EssOilDB

Restructuring of Essential Oil Database
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Mapping V1.0 to V2.0 #88

Open petermr opened 4 years ago

petermr commented 4 years ago

Currently V1.0 consists of 2 files, for which I suggest actions:

info_p a list of plant and their attributes.

Typically:

key species location    year    biblio  title   authors jrnl    family  habit
    JEAcakoprtu2002Roo  Acorus calamus  Konyo Province,Turkey   1997    VOL. 14,366-368 (Sep/Oct 2002)  Volatile Constituents of the Essential Oil of Acorus calamus L. Growth in Konya Province (Turkey).  M. Ozcan,A. Akgul,J.C Chalchat. Journal of Essential Oil Research   Acoraceae   Plant

The key links the two tables and must be preserved during the conversion process. It has no essential role in the future.

The essential fields are:

*family is derivative from species

It is critical that all three essential fields get unique identifiers so that when creating th V2.0 tables no information is lost.

ACTION create tables and identifiers for plant , location, biblio

info_c a list of compounds and attributes.

Typically:

    key compound    cas percent plantpart   analytical  formula chemclass   activity    Planttype   Normal??    systemname
    JEMlofl2007Lea  1,8-cineole 470-82-6    3.2 leaf    GC-FID and GC/MS    C10H18O monoterpene derivative  NA  Plant   Normal  2,2,4-trimethyl-3-oxabicyclo[2.2.2]octane