Integrate with Other Java Protein Structure Code (eg: BioJava)

gilleain / tops

Topology of Oriented Protein Structures

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Integrate with Other Java Protein Structure Code (eg: BioJava) #1

Open gilleain opened 9 years ago

gilleain commented 9 years ago

In general, integration of the TOPS code with other java protein data models (Jmol, BioJava, ...). This issue on BioJava suggests drawing TOPS (or other topology diagrams) from BioJava:

https://github.com/biojava/biojava/issues/127

A necessary condition for this might be a java version of the 2D layout of cartoons. The other issue would be whether BioJava has a DSSP implementation. Certainly Jmol has one.

andreasprlic commented 8 years ago

I just found this one. BioJava now has a DSSP implementation (class SecStrucCalc in the latest codebase).