vandam60 commented 11 months ago

Problem description

I am unable to use condo to install pygimli.
when I run the command, conda create -n pg -c gimli -c conda-forge pygimli=1.4.5 it runs for hours and it doesn't finish.

I have tried to build from source using the directions found here. instead of brew I used port. I am able to get to go through the CMake build using:

cmake ../gimli -DPYTHON_EXECUTABLE=/Users/u6030191/anaconda3/bin/python3.11 -DPYTHON_INCLUDE_DIR=/opt/local/library/Frameworks/Python.framework/Versions/3.11/include/python3.11m -DPYTHON_LIBRARY=/opt/local/library/Frameworks/Python.framework/Version -DPY_NUMPY=/Users/u6030191/anaconda3/lib/python3.11/site-packages/numpy

at the bottom you see that I get the message "pygimli can be build. run: make pygimli"

But when I run the command make -j 8 make gimili make pygimili found on the installing from source page, I get the errors:

Consolidate compiler generated dependencies of target gimli [ 2%] Building CXX object core/src/CMakeFiles/gimli.dir/gimli.cpp.o In file included from /Users/u6030191/src/gimli/gimli/core/src/gimli.cpp:31: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.3.sdk/System/Library/Frameworks/vecLib.framework/Headers/cblas.h:279:65: error: parameter declarator cannot be qualified const enum CBLAS_TRANSPOSE TransA, const int M, const int N, ^~~ /Users/u6030191/src/gimli/gimli/core/src/gimli.h:192:18: note: expanded from macro 'M'

define __M std::cout << "*** " << WHERE << std::endl;

I am stuck and have worked on this for more than 20 hours. any help you can give me will be so much appreciated. thank you, ---tonie

output to the screen from CMAKE:

-- CMAKE_SOURCE_DIR="/Users/u6030191/src/gimli/gimli" -- System: Darwin Darwin-22.6.0 22.6.0 -- Compiler: AppleClang -- UNIX: 1 on all UNIX-like OS's, including Apple OS X and CygWin -- WIN32: on Windows. Prior to 2.8.4 this included CygWin -- APPLE: 1 on Apple systems. does not imply the system is Mac OS X. -- MINGW: using the MinGW compiler in Windows -- MSYS: using the MSYS developer environment in Windows -- CYGWIN: using the CygWin version of cmake -- MSVC:
STATUS,TRUE STATUS,setting version from git description: v1.4.5-60-g860c95a7 -- Target is 64 bits -- ThirdParty set to: /Users/u6030191/src/gimli/gimli/../thirdParty/ -- External set to: /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64 -- ** PYTHON * -- Manually searching for python (pre cmake 3.14): 3 -- Python_INCLUDE_DIRS: /opt/local/library/Frameworks/Python.framework/Versions/3.11/include/python3.11m -- Python_LIBRARIES: /opt/local/library/Frameworks/Python.framework/Version -- Python_NumPy: TRUE, /Users/u6030191/anaconda3/lib/python3.11/site-packages/numpy -- ** BOOST * -- Trying to guess boost installation: -- BOOST_ROOT: -- Boost_INCLUDE_DIR: /usr/local/include -- ** BOOST_PYTHON * -- boost-python not found by cmake ... trying to determine boost-python manually ... -- ----------- searching for libboost_python311 -- ----------- found: -- Boost_PYTHON_FOUND:1 -- Boost_PYTHON_LIBRARY:Boost::python -- ** Misc * -- Triangle_LIBRARIES = /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64/lib/libtriangle.a -- Find or build Triangle at: TRIANGLE_FOUND force: True -- Checking for package 'TRIANGLE' -- External dir: /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64 -- Triangle_INCLUDE_DIR = /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64/include -- Triangle_LIBRARIES = /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64/lib/libtriangle.a -- Found: TRUE -- Local build Triangle forced: True -- Find or build Triangle done. -- BLAS found:TRUE -- OpenBLAS is used: /opt/local/lib/libopenblas.dylib -- UMFPACK_INCLUDES : /opt/local/include -- UMFPACK_LIBRARIES : /opt/local/lib/libumfpack.dylib -- Checking for package 'CHOLMOD' -- CHOLMOD_LIBRARIES: /opt/local/lib/libcholmod.dylib -- not found cppunit CMake Warning (dev) at /opt/local/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to find_package_handle_standard_args (READPROC) does not match the name of the calling package (readproc). This can lead to problems in calling code that expects find_package result variables (e.g., _FOUND) to follow a certain pattern. Call Stack (most recent call first): core/cmake/Findreadproc.cmake:22 (find_package_handle_standard_args) CMakeLists.txt:531 (find_package) This warning is for project developers. Use -Wno-dev to suppress it.

-- readproc could not be found. (missing: READPROC_LIBRARIES READPROC_INCLUDE_DIR) -- Find or build castxml at: CASTXML_FOUND force: True -- Found castxml executable: -- Found: -- Local build castxml forced: True -- Find or build castxml done. -- clang++ found : /usr/bin/clang -- Find or build castxml at: CASTXML_FOUND force: True -- Found castxml executable: -- Found: -- Local build castxml forced: True -- Find or build castxml done. -- Find or build pygccxml at: PYGCCXML_FOUND force: True Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pygccxml' -- Find python module pygccxml fails: -- Result: 1 -- Output: -- Maybe you can provide the location by stetting PY_PYGCCXML -- Could NOT find pygccxml (missing: PY_PYGCCXML) -- Found pygccxml path: /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64 -- Found pygccxml path: /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64 -- Found pygccxml path: /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64 -- Found: -- Local build pygccxml forced: True -- Find or build pygccxml done. -- Find or build pyplusplus at: PYPLUSPLUS_FOUND force: True Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pyplusplus' -- Find python module pyplusplus fails: -- Result: 1 -- Output: -- Maybe you can provide the location by stetting PY_PYPLUSPLUS -- Could NOT find pyplusplus (missing: PY_PYPLUSPLUS) -- Found pyplusplus path: /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64 -- Found: -- Local build pyplusplus forced: True -- Find or build pyplusplus done. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Search recursive for *.rst from here: /Users/u6030191/src/gimli/gimli -- DOCFILES: ../core/python/apps/gimliAUTHORS.rstCITATION.rstCOPYING.rstINSTALLATION.rstREADME.rstcore/python/apps/gimlidependencies.rstdoc/BUILD_LINUX.rstdoc/BUILD_MAC.rstdoc/BUILD_WIN.rstdoc/_templates/module.rstdoc/about.rstdoc/citation.rstdoc/compilation.rstdoc/contrib.rstdoc/design.rstdoc/dev.rstdoc/documentation.rstdoc/faq.rstdoc/glossary.rstdoc/installation.rstdoc/license.rstdoc/paper/cg17/index.rstdoc/pygimliapi/index.rstdoc/references.rstdoc/tools.rst -- PNGFILES: ../core/python/apps/gimlicore/python/apps/gimlidoc/_static/bg_dark.pngdoc/_static/bg_light.pngdoc/_static/cad_tutorial/freecad_fig.pngdoc/_static/cad_tutorial/gmsh_fig.pngdoc/_static/gmsh/bbox_coordinate.pngdoc/_static/gmsh/create_point.pngdoc/_static/gmsh/examples.pngdoc/_static/gmsh/line.pngdoc/_static/gmsh/mod_inv.pngdoc/_static/gmsh/surf1.pngdoc/_static/pg_design.pngdoc/_static/usecases/bergmann2014.pngdoc/_static/usecases/costabel2016.pngdoc/_static/usecases/gruenenbaum2023.pngdoc/_static/usecases/guenther2012.pngdoc/_static/usecases/guenther2016.pngdoc/_static/usecases/hellman2017.pngdoc/_static/usecases/huebner2017.pngdoc/_static/usecases/jordi2018.pngdoc/_static/usecases/loewer2017.pngdoc/_static/usecases/martin2013.pngdoc/_static/usecases/nazari2023.pngdoc/_static/usecases/pasquale2019.pngdoc/_static/usecases/rochlitz2018.pngdoc/_static/usecases/rochlitz2023.pngdoc/_static/usecases/ronczka2015a.pngdoc/_static/usecases/ronczka2015b.pngdoc/_static/usecases/ronczka2017.pngdoc/_static/usecases/skibbe2018.pngdoc/_static/usecases/skibbe2021.pngdoc/_static/usecases/steiner2019.pngdoc/_static/usecases/uecker2022.pngdoc/_static/usecases/wadas2022.pngdoc/_static/usecases/wagner2015.pngdoc/_static/usecases/wunderlich2018.pngpygimli/viewer/pv/pyqt/3dlogo.png -- BIBFILES: ../core/python/apps/gimlicore/python/apps/gimlidoc/gimliuses.bibdoc/libgimli.bibdoc/references.bib -- PYFILES: ../core/python/apps/gimlicore/python/apps/gimlidoc/paper/cg17/example-1.pydoc/paper/cg17/example-2.pydoc/paper/cg17/example-2_modelling.pydoc/paper/cg17/example-2_visualization.py -- ** -- Dependencies found -- ** -- THREADS : std
-- USE_OPENBLAS : TRUE, OPENBLAS_CBLAS_FOUND :TRUE -- BLAS_LIBRARIES : /opt/local/lib/libopenblas.dylib -- OpenBLAS_INCLUDE_DIR : /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX13.3.sdk/System/Library/Frameworks/vecLib.framework/Headers -- CHOLMOD_LIBRARIES : /opt/local/lib/libcholmod.dylib -- UMFPACK_LIBRARIES : /opt/local/lib/libumfpack.dylib -- TRIANGLE_FOUND : TRUE Triangle_LIBRARIES: /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64/lib/libtriangle.a -- Python_EXECUTABLE : /Users/u6030191/anaconda3/bin/python3.11 -- Python_LIBRARY_DIRS : -- Python_LIBRARIES : /opt/local/library/Frameworks/Python.framework/Version -- Python_INCLUDE_DIRS : /opt/local/library/Frameworks/Python.framework/Versions/3.11/include/python3.11m -- Boost_INCLUDE_DIR : /usr/local/include -- Boost_PYTHON_LIBRARY : Boost::python -- Python_NumPy : TRUE /Users/u6030191/anaconda3/lib/python3.11/site-packages/numpy/core/include ver: -- CASTER_FOUND : TRUE Caster: /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64/bin/castxml -- PYGCCXML_FOUND : TRUE PYGCCXML: /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64 -- PYPLUSPLUS_FOUND : TRUE PYPLUSPLUS_PATH: /Users/u6030191/src/gimli/thirdParty/dist-AppleClang-14.0.3.14030022-64 -- -- ** -- *** Optional Dependencies found ** -- ** -- CPPUNIT :
-- Doxygen : NO -- Sphinx : TRUE /Users/u6030191/anaconda3/bin/sphinx-build sphinx-build 5.0.2

-- ** -- -- pygimli can be build. run: make pygimli -- ** -- -- Configuring done -- Generating done -- Build files have been written to: /Users/u6030191/src/gimli/build

Your environment

Please provide the output of print(pygimli.Report()) here. If that does not work, please give provide some additional information on your:

Operating system: Mac OS 13.6.1 (22G313) Python version: 3.11 pyGIMLi version: none however I ran "git clone https://github.com/gimli-org/gimli.git" Way of installation: manual compilation from source

Steps to reproduce

Tell us how to reproduce this issue. Ideally, you could paste the code that produces the error:

import pygimli as pg
...

Expected behavior

Tell us what should happen or what you want to achieve.

Actual behavior

Tell us what happens instead and/or provide the output of your script.

Paste your script output here.

If possible, please add one or more labels to your issue, e.g. if you expect that your issue is rather a question than a problem with the code, please add the label "question".

halbmy commented 11 months ago

when I run the command, conda create -n pg -c gimli -c conda-forge pygimli=1.4.5 it runs for hours and it doesn't finish.

We are aware of difficulties in resolving the conda solving process.

You can use the libmamba solver (a faster alternative) by either

conda install -n base conda-libmamba-solver
conda config --set solver libmamba

or update to the newest conda version where it is already implemented

conda update -n base conda

vandam60 commented 11 months ago

please don't close this. becasue of the holidays, i have not been able to try this out. please give me some more time.

florian-wagner commented 10 months ago

Yes, of course, take your time! And if you try, please directly test with the latest version pyGIMLi v1.4.6

Best wishes

Prithwijit-Chak commented 10 months ago

Hi,

I have been trying to install pygimli on windows by creating a separate conda environment with python version 3.10.13. However, I am getting the following error everytime. It seems like pygimli is not compatible with python >3.10?

I also tried installing using the command given in the instruction for installation. It is working fine but a python 3.9 environment is being created by default.

Output

(pg_test) C:\Users\pchakraborti>python --version Python 3.10.13

(pg_test) C:\Users\pchakraborti>conda install -c gimli -c conda-forge pygimli=1.4.6 Channels:

gimli
conda-forge
defaults Platform: win-64 Collecting package metadata (repodata.json): done Solving environment: / warning libmamba Added empty dependency for problem type SOLVER_RULE_UPDATE failed

LibMambaUnsatisfiableError: Encountered problems while solving:

package pygimli-1.4.6-py_0 requires pgcore 1.4.0.*, but none of the providers can be installed

Could not solve for environment specs The following packages are incompatible ├─ pin-1 is installable and it requires │ └─ python 3.10.* , which can be installed; └─ pygimli 1.4.6* is not installable because it requires └─ pgcore 1.4.0. , which requires └─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported.

Pins seem to be involved in the conflict. Currently pinned specs:

python 3.10.* (labeled as 'pin-1')

halbmy commented 10 months ago

On Windows, pyGIMLi is currently only available for Python 3.9. We will change this in the future but now we recommend to create a new environment as written on pygimli.org under installation.

florian-wagner commented 9 months ago

As this was originally a Mac issue, @vandam60, any news?

florian-wagner commented 8 months ago

Dear @Prithwijit-Chak @vandam60,

could you please try if conda create -n pg15 -c gimli -c conda-forge pygimli=1.5.0 works on your Mac machines?

Thanks Florian

jwhhh commented 6 months ago

Just to add some data points here. I tried the above command (conda create -n pg15 -c gimli -c conda-forge pygimli=1.5.0) on the following:

Mac (Intel) MacOS 12.0.1
Mac (M1) MacOS 14.3.1
Rocky Linux 8.9

I can confirm the installation command works on all of them without an error, but I can't seem to import pygimli on any of the above. I'm getting the same error as in #618.

mariosgeo commented 4 months ago

I also confirm this on mac m2. Installation goes ok, but can't import pygimli. Sumbolic links (as suggested) to the two libraries is creating a different issue with suitesparse.

05/07/24 - 07:19:00 - pyGIMLi - INFO - Found 1 regions. 05/07/24 - 07:19:00 - pyGIMLi - INFO - Creating forward mesh from region infos. 05/07/24 - 07:19:00 - pyGIMLi - INFO - Creating refined mesh (H2) to solve forward task. 05/07/24 - 07:19:00 - pyGIMLi - INFO - Mesh for forward task: Mesh: Nodes: 3211 Cells: 6176 Boundaries: 4708 05/07/24 - 07:19:00 - pyGIMLi - INFO - Use median(data values)=100.739 Mesh: Nodes: 0 Cells: 0 Boundaries: 0 ModellingBase::setMesh() copying new mesh ... Found datafile: 48 electrodes Found: 48 node-electrodes rMin = 1, rMax = 188 NGauLeg + NGauLag for inverse Fouriertransformation: 13 + 4 Found non-Neumann domain 0.00690071 s FOP updating mesh dependencies ... 1.917e-06 s min/max(dweight) = 33.3333/33.3333 05/07/24 - 07:19:00 - pyGIMLi - INFO - Created startmodel from forward operator: 1544, min/max=100.739000/100.739000 05/07/24 - 07:19:00 - pyGIMLi - INFO - Starting inversion. fop: <pygimli.physics.ert.ertModelling.ERTModelling object at 0x1570ca840> Data transformation: <pgcore.pygimli.RTransLogLU object at 0x1570caa70> Model transformation: <pgcore.pygimli.RTransLog object at 0x1570ca980> min/max (data): 11.67/483 min/max (error): 3%/3% min/max (start model): 101/101

Calculating response for model: min = 100.739 max = 100.739 Allocating memory for primary potential...... 0.00166708

No primary potential ./core/src/bert/dcfemmodelling.cpp:225 ./core/src/bert/dcfemmodelling.cpp:225 CHOLMOD warning: not Node: 0x600004d81e00 id: 52 50 0 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:943 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 ./core/src/sparsematrix.h:930 Traceback (most recent call last): for secondary field calculation. Calculating analytically... void GIMLI::dcfemDomainAssembleStiffnessMatrix(SparseMatrix &, const Mesh &, const Vector &, double, bool) [ValueType = double] WARNING! 47 nodes forced to homogen Dirichlet to fix singularity of stiffness matrix void GIMLI::dcfemDomainAssembleStiffnessMatrix(SparseMatrix &, const Mesh &, const Vector &, double, bool) [ValueType = double] WARNING! 47 nodes forced to homogen Dirichlet to fix singularity of stiffness matrix positive definite. file: /Users/runner/miniforge3/conda-bld/suitesparse_1715354135116/work/CHOLMOD/Cholesky/t_cholmod_rowfac_worker.c line: 433 0 marker: -99 ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 52 52 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 53 53 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 54 54 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 55 55 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 56 56 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 57 57 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 58 58 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 59 59 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 60 60 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 61 61 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 62 62 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 63 63 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 64 64 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 65 65 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 66 66 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 67 67 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 68 68 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 69 69 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 70 70 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 71 71 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 72 72 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 73 73 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 74 74 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 75 75 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 76 76 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 77 77 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 78 78 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 79 79 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 80 80 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 81 81 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 82 82 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 83 83 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 84 84 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 85 85 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 86 86 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 87 87 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 88 88 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 89 89 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 90 90 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 91 91 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 92 92 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 93 93 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 94 94 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 95 95 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 96 96 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 97 97 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 52 52 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 53 53 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 54 54 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 55 55 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 56 56 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 57 57 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 58 58 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 59 59 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 60 60 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 61 61 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 62 62 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 63 63 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 64 64 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 65 65 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 66 66 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 67 67 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 68 68 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 69 69 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 70 70 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 71 71 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 72 72 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 73 73 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 74 74 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 75 75 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 76 76 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 77 77 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 78 78 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 79 79 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 80 80 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 81 81 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 82 82 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 83 83 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 84 84 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 85 85 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 86 86 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 87 87 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 88 88 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 89 89 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 90 90 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 91 91 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 92 92 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 93 93 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 94 94 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 95 95 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 96 96 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 97 97 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 52 52 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 53 53 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 54 54 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 55 55 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 56 56 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 57 57 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 58 58 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 59 59 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 60 60 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 61 61 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 62 62 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 63 63 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 64 64 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 65 65 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 66 66 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 67 67 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 68 68 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 69 69 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 70 70 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 71 71 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 72 72 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 73 73 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 74 74 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 75 75 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 76 76 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 77 77 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 78 78 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 79 79 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 80 80 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 81 81 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 82 82 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 83 83 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 84 84 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 85 85 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 86 86 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 87 87 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 88 88 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 89 89 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 90 90 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 91 91 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 92 92 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 93 93 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 94 94 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 95 95 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 96 96 is not part of the sparsity pattern ValueType GIMLI::SparseMatrix::getVal(int, int, bool) const [ValueType = double] pos 97 97 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 52 52 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 53 53 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 54 54 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 55 55 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 56 56 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 57 57 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 58 58 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 59 59 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 60 60 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 61 61 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 62 62 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 63 63 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 64 64 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 65 65 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 66 66 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 67 67 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 68 68 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 69 69 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 70 70 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 71 71 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 72 72 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 73 73 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 74 74 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 75 75 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 76 76 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 77 77 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 78 78 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 79 79 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 80 80 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 81 81 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 82 82 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 83 83 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 84 84 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 85 85 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 86 86 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 87 87 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 88 88 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 89 89 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 90 90 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 91 91 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 92 92 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 93 93 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 94 94 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 95 95 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 96 96 is not part of the sparsity pattern void GIMLI::SparseMatrix::setVal(int, int, ValueType) [ValueType = double] pos 97 97 is not part of the sparsity pattern

Cell In[4], line 26 mgr.invert(mesh=mesh)

File /opt/anaconda3/envs/pg2/lib/python3.11/site-packages/pygimli/frameworks/methodManager.py:843 in invert self.fw.run(dataVals, errorVals, **kwargs)

File /opt/anaconda3/envs/pg2/lib/python3.11/site-packages/pygimli/frameworks/inversion.py:680 in run self.inv.start()

File /opt/anaconda3/envs/pg2/lib/python3.11/site-packages/pygimli/physics/ert/ertModelling.py:178 in response resp = self._core.response(mod)

RuntimeError: ./core/src/bert/electrode.cpp:111 virtual double GIMLI::ElectrodeShapeNode::geomMeanCellAttributes() const not yet implemented libgimli-v1.5.0

gimli-org / gimli