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giovannellilab / geochem

Geochemistry pipeline for processing and visualising data from IRMS, IC and ICP-MS
https://github.com/giovannellilab/geochem
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Include bubble plots of field data to add to the Exp Report #54

Closed alebastianoni closed 4 months ago

alebastianoni commented 5 months ago

Add the plots that should be included in the Expedition Report according to the GRL Expedition Report template of the Glab.

pH vs T with alkalinity colored by rock type

ggplot(env_data_df, aes(x=temp, y=ph, size=hco3, color=rock_type,stroke=0.25)) + scale_size(range = c(1, 20), name="Total Alk (mg/L)") + geom_point(alpha=1)+ scale_color_manual(env_data_df$rock_type, values=c("#238443","#c6dbef","#fed976","#d7b5d8"), breaks=c("siliciclastic","evaporitic","rhyolitic","granitic"))+ geom_text(aes(label= ID), colour = "black", size=2.5, hjust =-1.5, vjust =1.5, check_overlap = F)+ labs(title="", subtitle="", color="Rock type", y="pH", x="Temperature (°C)", size= "Total Alkalinity (mg/L of bicarbonate)")+ theme_glab(base_size=20)

guillecg commented 4 months ago

Solved in bfcdae0a2bbbc8311762654ad4f6c51a48e97f32