Define a minimal ML pipeline

giovannellilab / media-prediction

Prediction of media requirements for microbial species

GNU General Public License v3.0

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Closed guillecg closed 5 months ago

guillecg commented 5 months ago

Output tables and graphs

[x] Dimensionality reduction: 3D plots, feature importance, color by cluster, etc.
[x] Performance analysis: unsupervised metrics (both dim. reduction and clustering); supervised metrics (PR-REC AUC, ROC AUC, PRC, REC, etc.)

guillecg commented 5 months ago

Media2Taxa pipeline in 5eb421e19f7e968b430258932c8d5da9db6a9184 Taxa2Media pipeline in 0df9266466d63657bcf650d9008efbe22e2d5898

guillecg commented 5 months ago

Solved in 0df9266466d63657bcf650d9008efbe22e2d5898