giovannicoppola / zothero

Rapidly search and cite Zotero entries from Alfred
MIT License
118 stars 9 forks source link

Cannot search Zotero database #1

Closed Miaoyifei-mz closed 2 years ago

Miaoyifei-mz commented 2 years ago

Hello, when I run this workflow, Alfred shows that the database is locked.

image
[12:10:00.924] Logging Started...
[12:10:01.408] ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] Queuing argument '3d'
[12:10:03.833] ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] Queuing argument '3'
[12:10:04.076] ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] Queuing argument '3d'
[12:10:09.167] ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] Script with argv '3' finished
[12:10:09.169] STDERR: ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] .
12:10:03 workflow.py:2093 DEBUG    ---------- ZotHero (1.99.3) ----------
12:10:03 zh.py:686 DEBUG    args={'--bibliography': False,
 '--help': False,
 '--paste': False,
 '--style': None,
 '--text': None,
 '--title': None,
 '<citekey>': None,
 '<id>': None,
 '<key>': None,
 '<query>': '3',
 '<style>': None,
 '<value>': None,
 'attachments': False,
 'citations': False,
 'clear': False,
 'config': False,
 'copy': False,
 'fields': False,
 'locale': False,
 'notify': False,
 'reindex': False,
 'search': True,
 'setvar': False,
 'style': False}
12:10:03 config.py:86 DEBUG    [config] datadir='/Users/zhuangzhu/Zotero'
12:10:03 core.py:72 DEBUG    [core] cachedir='~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero'
12:10:03 core.py:73 DEBUG    [core] zotero_dir='~/Zotero'
12:10:03 core.py:74 DEBUG    [core] attachments_dir=None
12:10:03 core.py:133 DEBUG    [core] storage='~/Zotero/storage'
12:10:03 core.py:134 DEBUG    [core] styles='~/Zotero/styles'
12:10:03 zotero.py:205 DEBUG    [zotero] database last modified 17.7 hours ago
12:10:03 index.py:202 DEBUG    [index] last updated 17.7 hours ago
12:10:03 index.py:153 DEBUG    [index] opened '~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero/search.sqlite'
12:10:03 index.py:301 DEBUG    [index] updating '~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero/search.sqlite' ...
12:10:03 zotero.py:186 DEBUG    [zotero] opened database '~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero/zotero.sqlite'
12:10:03 zotero.py:296 DEBUG    [zotero] + "Controlled dual delivery of BMP-2 and dexamethasone by nanoparticle-embedded electrospun nanofibers for the efficient repair of critical-sized rat calvarial defect"
12:10:03 zotero.py:348 DEBUG    [zotero] attachment={'key': 'RJQN3MJU', 'name': 'Li et al. - 2015 - Controlled dual delivery of BMP-2 and dexamethason.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/RJQN3MJU/Li et al. - 2015 - Controlled dual delivery of BMP-2 and dexamethason.pdf', 'url': None}
12:10:03 zotero.py:348 DEBUG    [zotero] attachment={'key': 'MHI8EXH7', 'name': 'ScienceDirect Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/MHI8EXH7/S014296121401062X.html', 'url': 'https://www.sciencedirect.com/science/article/abs/pii/S014296121401062X'}
12:10:09 workflow.py:2114 ERROR    database is locked
Traceback (most recent call last):
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/workflow/workflow.py", line 2107, in run
    func(self)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/zh.py", line 736, in main
    return do_search(query)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/zh.py", line 133, in do_search
    if app.stale and not running:
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/core.py", line 159, in stale
    if self.index.empty:
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/core.py", line 152, in index
    self._index.update(self.zotero)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/index.py", line 277, in update
    if not self._update(zot, force):
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/index.py", line 325, in _update
    for e in it:
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/zotero.py", line 268, in all_entries
    yield self._load_entry(row)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/zotero.py", line 320, in _load_entry
    e.citekey = self.bbt.citekey('{}_{}'.format(e.library, e.key))
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/zotero.py", line 195, in bbt
    self._bbt = BetterBibTex(self.datadir)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/betterbibtex.py", line 48, in __init__
    row = conn.execute(SQL).fetchone()
sqlite3.OperationalError: database is locked
12:10:09 workflow.py:2116 INFO     for assistance, see: https://github.com/giovannicoppola/zothero/issues
12:10:09 workflow.py:2136 DEBUG    ---------- finished in 5.249s ----------
[12:10:09.174] ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] {
  "items": [
    {
      "title": "Error in workflow 'ZotHero'",
      "subtitle": "database is locked",
      "valid": false,
      "icon": {
        "path": "/System/Library/CoreServices/CoreTypes.bundle/Contents/Resources/AlertStopIcon.icns"
      }
    }
  ]
}
[12:10:14.475] ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] Script with argv '3d' finished
[12:10:14.482] STDERR: ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] .
12:10:09 workflow.py:2093 DEBUG    ---------- ZotHero (1.99.3) ----------
12:10:09 zh.py:686 DEBUG    args={'--bibliography': False,
 '--help': False,
 '--paste': False,
 '--style': None,
 '--text': None,
 '--title': None,
 '<citekey>': None,
 '<id>': None,
 '<key>': None,
 '<query>': '3d',
 '<style>': None,
 '<value>': None,
 'attachments': False,
 'citations': False,
 'clear': False,
 'config': False,
 'copy': False,
 'fields': False,
 'locale': False,
 'notify': False,
 'reindex': False,
 'search': True,
 'setvar': False,
 'style': False}
12:10:09 config.py:86 DEBUG    [config] datadir='/Users/zhuangzhu/Zotero'
12:10:09 core.py:72 DEBUG    [core] cachedir='~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero'
12:10:09 core.py:73 DEBUG    [core] zotero_dir='~/Zotero'
12:10:09 core.py:74 DEBUG    [core] attachments_dir=None
12:10:09 core.py:133 DEBUG    [core] storage='~/Zotero/storage'
12:10:09 core.py:134 DEBUG    [core] styles='~/Zotero/styles'
12:10:09 zotero.py:205 DEBUG    [zotero] database last modified 17.7 hours ago
12:10:09 index.py:202 DEBUG    [index] last updated 17.7 hours ago
12:10:09 index.py:153 DEBUG    [index] opened '~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero/search.sqlite'
12:10:09 index.py:301 DEBUG    [index] updating '~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero/search.sqlite' ...
12:10:09 zotero.py:186 DEBUG    [zotero] opened database '~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero/zotero.sqlite'
12:10:09 zotero.py:296 DEBUG    [zotero] + "Controlled dual delivery of BMP-2 and dexamethasone by nanoparticle-embedded electrospun nanofibers for the efficient repair of critical-sized rat calvarial defect"
12:10:09 zotero.py:348 DEBUG    [zotero] attachment={'key': 'RJQN3MJU', 'name': 'Li et al. - 2015 - Controlled dual delivery of BMP-2 and dexamethason.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/RJQN3MJU/Li et al. - 2015 - Controlled dual delivery of BMP-2 and dexamethason.pdf', 'url': None}
12:10:09 zotero.py:348 DEBUG    [zotero] attachment={'key': 'MHI8EXH7', 'name': 'ScienceDirect Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/MHI8EXH7/S014296121401062X.html', 'url': 'https://www.sciencedirect.com/science/article/abs/pii/S014296121401062X'}
12:10:14 workflow.py:2114 ERROR    database is locked
Traceback (most recent call last):
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/workflow/workflow.py", line 2107, in run
    func(self)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/zh.py", line 736, in main
    return do_search(query)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/zh.py", line 133, in do_search
    if app.stale and not running:
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/core.py", line 159, in stale
    if self.index.empty:
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/core.py", line 152, in index
    self._index.update(self.zotero)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/index.py", line 277, in update
    if not self._update(zot, force):
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/index.py", line 325, in _update
    for e in it:
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/zotero.py", line 268, in all_entries
    yield self._load_entry(row)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/zotero.py", line 320, in _load_entry
    e.citekey = self.bbt.citekey('{}_{}'.format(e.library, e.key))
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/zotero.py", line 195, in bbt
    self._bbt = BetterBibTex(self.datadir)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/betterbibtex.py", line 48, in __init__
    row = conn.execute(SQL).fetchone()
sqlite3.OperationalError: database is locked
12:10:14 workflow.py:2116 INFO     for assistance, see: https://github.com/giovannicoppola/zothero/issues
12:10:14 workflow.py:2136 DEBUG    ---------- finished in 5.234s ----------
[12:10:14.486] ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] {
  "items": [
    {
      "title": "Error in workflow 'ZotHero'",
      "subtitle": "database is locked",
      "valid": false,
      "icon": {
        "path": "/System/Library/CoreServices/CoreTypes.bundle/Contents/Resources/AlertStopIcon.icns"
      }
    }
  ]
}

Version information

macOS: 12.4 Alfred 4.6.6

raykr commented 2 years ago

me too!

giovannicoppola commented 2 years ago

THanks @RayKr for the fix. @Miaoyifei-mz does it work for you?

Miaoyifei-mz commented 2 years ago

Sorry, it still cannot work.

image
giovannicoppola commented 2 years ago

Would you be able to share the log file, or the part of it with the error message?

On Tue, Jun 14, 2022, 9:42 PM Miaoyifei-mz @.***> wrote:

Sorry, it still cannot work. [image: image] https://user-images.githubusercontent.com/60280844/173718140-1c3f190e-e4cf-4ad3-8bd9-16cf2067c684.png

— Reply to this email directly, view it on GitHub https://github.com/giovannicoppola/zothero/issues/1#issuecomment-1155881540, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABMBYSYH7GPGX45RVJRXTUTVPEYG3ANCNFSM5XXHXIJA . You are receiving this because you commented.Message ID: @.***>

Miaoyifei-mz commented 2 years ago

Thank you!

[15:43:16.836] Logging Started...
[15:43:19.821] ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] Queuing argument 'd'
[15:43:19.958] ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] Script with argv 'd' finished
[15:43:19.960] STDERR: ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] .
15:43:19 workflow.py:2093 DEBUG    ---------- ZotHero (1.99.4) ----------
15:43:19 zh.py:704 DEBUG    args={'--bibliography': False,
 '--help': False,
 '--paste': False,
 '--style': None,
 '--text': None,
 '--title': None,
 '<citekey>': None,
 '<id>': None,
 '<key>': None,
 '<query>': 'd',
 '<style>': None,
 '<value>': None,
 'attachments': False,
 'citations': False,
 'clear': False,
 'config': False,
 'copy': False,
 'fields': False,
 'locale': False,
 'notify': False,
 'reindex': False,
 'search': True,
 'setvar': False,
 'style': False}
15:43:19 config.py:86 DEBUG    [config] datadir='/Users/zhuangzhu/Zotero'
15:43:19 core.py:72 DEBUG    [core] cachedir='~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero'
15:43:19 core.py:73 DEBUG    [core] zotero_dir='~/Zotero'
15:43:19 core.py:74 DEBUG    [core] attachments_dir=None
15:43:19 core.py:133 DEBUG    [core] storage='~/Zotero/storage'
15:43:19 core.py:134 DEBUG    [core] styles='~/Zotero/styles'
15:43:19 cache.py:311 DEBUG    [cache] opening store 'styles'...
15:43:19 cache.py:311 DEBUG    [cache] opening store 'modtimes'...
15:43:19 zh.py:122 DEBUG    Citation style: Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials
15:43:19 zotero.py:205 DEBUG    [zotero] database last modified 26.5 secs ago
15:43:19 index.py:202 DEBUG    [index] last updated 6.1 hours ago
15:43:19 index.py:301 DEBUG    [index] updating '~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero/search.sqlite' ...
15:43:19 index.py:153 DEBUG    [index] opened '~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero/search.sqlite'
15:43:19 zotero.py:186 DEBUG    [zotero] opened database '~/Library/Caches/com.runningwithcrayons.Alfred/Workflow Data/giovanni-zothero/zotero.sqlite'
15:43:19 zotero.py:296 DEBUG    [zotero] + "Controlled dual delivery of BMP-2 and dexamethasone by nanoparticle-embedded electrospun nanofibers for the efficient repair of critical-sized rat calvarial defect"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'RJQN3MJU', 'name': 'Li et al. - 2015 - Controlled dual delivery of BMP-2 and dexamethason.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/RJQN3MJU/Li et al. - 2015 - Controlled dual delivery of BMP-2 and dexamethason.pdf', 'url': None}
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'MHI8EXH7', 'name': 'ScienceDirect Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/MHI8EXH7/S014296121401062X.html', 'url': 'https://www.sciencedirect.com/science/article/abs/pii/S014296121401062X'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "静电纺丝制备多孔/中空二氧化硅纳米纤维及其功能化"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'MI5WA57M', 'name': '张海连 - 2013 - 静电纺丝制备多孔中空二氧化硅纳米纤维及其功能化.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/MI5WA57M/张海连 - 2013 - 静电纺丝制备多孔中空二氧化硅纳米纤维及其功能化.pdf', 'url': 'https://kns.cnki.net/kcms/download.aspx?filename=TBlNjFUUiVHTBpVeJdEbZhTe5pUdZlVNjRHMTl3U4R3bmdTRKNWYvMkdSBDc3Azd6JkVTJkQjZXVmdVYolXQSJna4FVeERnaxQEVWNHaM9UckxUNTFVV4MTVwR2LCVXQwkWTVNTYiF1KS9URvYTMhlFTkdWSMBlR&dflag=pdfdown&dflag=cajdown&tablename=CMFD201302&uid=WEEvREcwSlJHSldSdmVqM1BLUWh5QjQ3MHRBdUQ3enI5ZmJYSjZJRnovaz0=$9A4hF_YAuvQ5obgVAqNKPCYcEjKensW4IQMovwHtwkF4VYPoHbKxJw!!'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "《北海道物语》:你忘掉了爱情本来的模样"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'M3Z8WKJB', 'name': 'Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/M3Z8WKJB/97558810.html', 'url': 'https://zhuanlan.zhihu.com/p/97558810'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "A flexible, adhesive and self-healable hydrogel-based wearable strain sensor for human motion and physiological signal monitoring"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'W8M3FY6W', 'name': 'Xia et al. - 2019 - A flexible, adhesive and self-healable hydrogel-ba.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/W8M3FY6W/Xia et al. - 2019 - A flexible, adhesive and self-healable hydrogel-ba.pdf', 'url': None}
15:43:19 zotero.py:296 DEBUG    [zotero] + "A self-healable and highly flexible supercapacitor integrated by dynamically cross-linked electro-conductive hydrogels based on nanocellulose-templated carbon nanotubes embedded in a viscoelastic polymer network"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'FJEBTAPG', 'name': 'Han et al. - 2019 - A self-healable and highly flexible supercapacitor.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/FJEBTAPG/Han et al. - 2019 - A self-healable and highly flexible supercapacitor.pdf', 'url': None}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Approaching truly sustainable solar cells by the use of water and cellulose derivatives"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'C269265E', 'name': 'Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/C269265E/c6gc02625g.html', 'url': 'https://pubs.rsc.org/en/content/articlehtml/2016/gc/c6gc02625g'}
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Atomic Layer Deposition on Electrospun Polymer Fibers as a Direct Route to Al2O3 Microtubes with Precise Wall Thickness Control"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Co-electrospun SiO2 hollow nanostructured fibers with hierarchical walls"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Dually pH-responsive polyelectrolyte complex hydrogel composed of polyacrylic acid and poly (2-(dimthylamino) ethyl methacrylate)"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Electroluminescence of Giant Stretchability"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Extremely Stretchable Strain Sensors Based on Conductive Self-Healing Dynamic Cross-Links Hydrogels for Human-Motion Detection"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Fast-moving soft electronic fish"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Fe <sup>3+</sup> Cross-Linked Polyaniline/Cellulose Nanofibril Hydrogels for High-Performance Flexible Solid-State Supercapacitors"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Highly stretchable electroluminescent skin for optical signaling and tactile sensing"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Highly stretchable, transparent ionic touch panel"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Microfluidic Chip-Based Fabrication of PLGA Microfiber Scaffolds for Tissue Engineering"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Microfluidic Fabrication of Biomimetic Helical Hydrogel Microfibers for Blood‐Vessel‐on‐a‐Chip Applications"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Microfluidic spinning of micro- and nano-scale fibers for tissue engineering"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Modification of a hydrophilic linear polyurethane by crosslinking with a polydimethylsiloxane. Influence of the crosslink density and of the hydrophobic/hydrophilic balance on the water transport properties"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Multi-Structure Hollow Nanofibers: Controlled Synthesis and Photocatalytic Applications"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Mussel-Inspired Autonomously Self-Healable All-in-One Supercapacitor with Biocompatible Hydrogel"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Nanostructured conductive polypyrrole hydrogels as high-performance, flexible supercapacitor electrodes"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "pH- and Thermal-Responsive Multishape Memory Hydrogel."
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15:43:19 zotero.py:296 DEBUG    [zotero] + "pH-Tunable Calcium Phosphate Covered Mesoporous Silica Nanocontainers for Intracellular Controlled Release of Guest Drugs"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "pH敏感性智能水凝胶的设计及其应用"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Plasma assisted synthesis of hollow nanofibers using electrospun sacrificial templates"
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15:43:19 zotero.py:296 DEBUG    [zotero] + "Polyelectrolyte multilayer functionalized mesoporous silica nanoparticles for pH-responsive drug delivery: layer thickness-dependent release profiles and biocompatibility"
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15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'RI9D9HJC', 'name': 'Dayal and Kyu - 2006 - Porous fiber formation in polymer-solvent system u.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/RI9D9HJC/Dayal and Kyu - 2006 - Porous fiber formation in polymer-solvent system u.pdf', 'url': 'https://aip.scitation.org/doi/pdf/10.1063/1.2259812'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Preparation of Ga2O3 nanoribbons and tubes by electrospinning"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'MAFLHU7V', 'name': 'ScienceDirect Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/MAFLHU7V/S0022024807006793.html', 'url': 'https://www.sciencedirect.com/science/article/pii/S0022024807006793'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Preparation of Submicron Polypyrrole/Poly(methyl methacrylate) Coaxial Fibers and Conversion to Polypyrrole Tubes and Carbon Tubes"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': '8WXK3ULA', 'name': 'ACS Full Text Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/8WXK3ULA/la061399t.html', 'url': 'https://pubs.acs.org/doi/full/10.1021/la061399t'}
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': '6WRFD7JY', 'name': 'Full Text PDF', 'path': '/Users/zhuangzhu/Zotero/storage/6WRFD7JY/Dong and Jones - 2006 - Preparation of Submicron PolypyrrolePoly(methyl m.pdf', 'url': 'https://pubs.acs.org/doi/pdf/10.1021/la061399t'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Recent advances in designing conductive hydrogels for flexible electronics"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'EKNP2IHX', 'name': 'Peng et al. - 2020 - Recent advances in designing conductive hydrogels .pdf', 'path': '/Users/zhuangzhu/Zotero/storage/EKNP2IHX/Peng et al. - 2020 - Recent advances in designing conductive hydrogels .pdf', 'url': 'https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/inf2.12113'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Self-Assembled Graphene Hydrogel <i>via</i> a One-Step Hydrothermal Process"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'CVGA2LPI', 'name': 'Xu et al. - 2010 - Self-Assembled Graphene Hydrogel via a One-.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/CVGA2LPI/Xu et al. - 2010 - Self-Assembled Graphene Hydrogel via a One-.pdf', 'url': None}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Self-recovering tough gel electrolyte with adjustable supercapacitor performance"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'GYJQBIW4', 'name': 'Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/GYJQBIW4/adma.html', 'url': 'https://onlinelibrary.wiley.com/doi/full/10.1002/adma.201400240'}
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'DEIB2THY', 'name': 'Liu et al. - 2014 - Self-Recovering Tough Gel Electrolyte with Adjusta.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/DEIB2THY/Liu et al. - 2014 - Self-Recovering Tough Gel Electrolyte with Adjusta.pdf', 'url': 'https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/adma.201400240'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "SnO2nanotubes fabricated using electrospinning and atomic layer deposition and their gas sensing performance"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': '85X3MTEV', 'name': 'Kim et al. - 2010 - SnO2nanotubes fabricated using electrospinning and.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/85X3MTEV/Kim et al. - 2010 - SnO2nanotubes fabricated using electrospinning and.pdf', 'url': 'https://iopscience.iop.org/article/10.1088/0957-4484/21/24/245605/pdf'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Spring-shaped stimuli-responsive hydrogel actuator with large deformation"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'HRQSVIGY', 'name': 'Yoshida et al. - 2018 - Spring-shaped stimuli-responsive hydrogel actuator.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/HRQSVIGY/Yoshida et al. - 2018 - Spring-shaped stimuli-responsive hydrogel actuator.pdf', 'url': None}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Stimuli-Responsive Materials Based on Interpenetrating Polymer Liquid Crystal Hydrogels"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'C4H8BUQP', 'name': 'Stumpel et al. - 2015 - Stimuli-Responsive Materials Based on Interpenetra.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/C4H8BUQP/Stumpel et al. - 2015 - Stimuli-Responsive Materials Based on Interpenetra.pdf', 'url': 'https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/adfm.201500745'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Strain-programmable fiber-based artificial muscle"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'WBSDP7J6', 'name': 'Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/WBSDP7J6/145.html', 'url': 'https://science.sciencemag.org/content/365/6449/145.abstract'}
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'IQKX8QKF', 'name': 'PubMed entry', 'path': None, 'url': 'http://www.ncbi.nlm.nih.gov/pubmed/31296764'}
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'G8L2ES6M', 'name': 'Kanik et al. - 2019 - Strain-programmable fiber-based artificial muscle.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/G8L2ES6M/Kanik et al. - 2019 - Strain-programmable fiber-based artificial muscle.pdf', 'url': 'https://science.sciencemag.org/content/sci/365/6449/145.full.pdf'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "The fabrication of hollow multilayered polyelectrolyte fibrous mats and its morphology study"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'DKNPALVJ', 'name': 'Ge et al. - 2007 - The fabrication of hollow multilayered polyelectro.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/DKNPALVJ/Ge et al. - 2007 - The fabrication of hollow multilayered polyelectro.pdf', 'url': 'https://moscow.sci-hub.se/344/49679a4f2757159d4387f51d888ebdb6/ge2007.pdf#view=FitH'}
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'L4NYSQ98', 'name': 'ScienceDirect Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/L4NYSQ98/S0927775706005711.html', 'url': 'https://www.sciencedirect.com/science/article/abs/pii/S0927775706005711'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Triple-coaxial electrospun amorphous carbon nanotubes with hollow graphitic carbon nanospheres for high-performance Li ion batteries"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'M2FRU5PY', 'name': 'Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/M2FRU5PY/c2ee22085g.html', 'url': 'https://pubs.rsc.org/en/content/articlelanding/2012/EE/c2ee22085g#!divAbstract'}
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'AT7VS5WZ', 'name': 'Chen et al. - 2012 - Triple-coaxial electrospun amorphous carbon nanotu.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/AT7VS5WZ/Chen et al. - 2012 - Triple-coaxial electrospun amorphous carbon nanotu.pdf', 'url': 'https://pubs.rsc.org/en/content/articlepdf/2012/ee/c2ee22085g'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Ultrastretchable and superior healable supercapacitors based on a double cross-linked hydrogel electrolyte"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'A5P7VS7Y', 'name': 'Li et al. - 2019 - Ultrastretchable and superior healable supercapaci.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/A5P7VS7Y/Li et al. - 2019 - Ultrastretchable and superior healable supercapaci.pdf', 'url': None}
15:43:19 zotero.py:296 DEBUG    [zotero] + "Use of Electrospinning to Directly Fabricate Hollow Nanofibers with Functionalized Inner and Outer Surfaces"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'RZ2LK7R2', 'name': 'Li et al. - 2005 - Use of Electrospinning to Directly Fabricate Hollo.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/RZ2LK7R2/Li et al. - 2005 - Use of Electrospinning to Directly Fabricate Hollo.pdf', 'url': 'https://www.onlinelibrary.wiley.com/doi/pdfdirect/10.1002/smll.200400056'}
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'ICMNTD4G', 'name': 'Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/ICMNTD4G/smll.html', 'url': 'https://onlinelibrary.wiley.com/doi/full/10.1002/smll.200400056'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "你……你如果认识从前的我,也许你会原谅现在的我"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': '3BC4F54Q', 'name': 'Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/3BC4F54Q/1930133.html', 'url': 'https://book.douban.com/review/1930133/'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "你在创作你的未来,未来也正在创造你"
15:43:19 zotero.py:296 DEBUG    [zotero] + "刚刚,「天问一号」发射成功,中国首次火星探测任务启航"
15:43:19 zotero.py:296 DEBUG    [zotero] + "半芳香族耐高温聚酰胺及其复合材料的制备与性能研究"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': '8PEGLCZ9', 'name': '刘冰肖 - 2019 - 半芳香族耐高温聚酰胺及其复合材料的制备与性能研究.pdf', 'path': '/Users/zhuangzhu/Zotero/storage/8PEGLCZ9/刘冰肖 - 2019 - 半芳香族耐高温聚酰胺及其复合材料的制备与性能研究.pdf', 'url': None}
15:43:19 zotero.py:296 DEBUG    [zotero] + "存量阅读+增量阅读,助你在学术的海洋上乘风破浪 - 少数派"
15:43:19 zotero.py:348 DEBUG    [zotero] attachment={'key': 'GR3DCNQI', 'name': 'Snapshot', 'path': '/Users/zhuangzhu/Zotero/storage/GR3DCNQI/61062.html', 'url': 'https://sspai.com/post/61062'}
15:43:19 zotero.py:296 DEBUG    [zotero] + "形而上学 - 维基百科,自由的百科全书"
15:43:19 workflow.py:2114 ERROR    __str__ returned non-string (type NoneType)
Traceback (most recent call last):
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/workflow/workflow.py", line 2107, in run
    func(self)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/zh.py", line 754, in main
    return do_search(query)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/zh.py", line 135, in do_search
    if app.stale and not running:
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/core.py", line 159, in stale
    if self.index.empty:
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/core.py", line 152, in index
    self._index.update(self.zotero)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/index.py", line 277, in update
    if not self._update(zot, force):
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/index.py", line 325, in _update
    for e in it:
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/zotero.py", line 268, in all_entries
    yield self._load_entry(row)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/zotero.py", line 316, in _load_entry
    e.notes = self._entry_notes(e.id)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/zotero.py", line 366, in _entry_notes
    return [strip_tags(row['note']) for row in rows]
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/zotero.py", line 366, in <listcomp>
    return [strip_tags(row['note']) for row in rows]
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/util.py", line 131, in strip_tags
    return HTMLText.strip(html)
  File "/Users/zhuangzhu/Nutstore Files/Alfred/Alfred.alfredpreferences/workflows/user.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607/lib/zothero/util.py", line 91, in strip
    return str(p)
TypeError: __str__ returned non-string (type NoneType)
15:43:19 workflow.py:2116 INFO     for assistance, see: https://github.com/giovannicoppola/zothero/issues
15:43:19 workflow.py:2136 DEBUG    ---------- finished in 0.047s ----------
[15:43:19.974] ZotHero[[Script Filter](alfredpreferences:workflows%3Eworkflow%3Euser.workflow.9F0B4AB2-7AC7-4EC2-9869-D8CA0F906607%3E53172C76-0F6F-4E84-8C96-D0E81629CBA4)] {
  "items": [
    {
      "title": "Error in workflow 'ZotHero'",
      "subtitle": "__str__ returned non-string (type NoneType)",
      "valid": false,
      "icon": {
        "path": "/System/Library/CoreServices/CoreTypes.bundle/Contents/Resources/AlertStopIcon.icns"
      }
    }
  ]
}
giovannicoppola commented 2 years ago

thank you @Miaoyifei-mz ! this last entry, does it have a note or anything different from the others? 15:43:19 zotero.py:296 DEBUG [zotero] + "形而上学 - 维基百科,自由的百科全书"

Miaoyifei-mz commented 2 years ago

Yes, it has a note.

giovannicoppola commented 2 years ago

aha! I didn't have notes, that's why I could not reproduce. could you try this version? thanks @Miaoyifei-mz

Miaoyifei-mz commented 2 years ago

Great, this version works! Thank you very much for your work! 😊 @giovannicoppola

raykr commented 2 years ago

aha! I didn't have notes, that's why I could not reproduce. could you try this version? thanks @Miaoyifei-mz

Nice work!