NB: for ease of sharing, this is a very small crop of a public vizgen image, and some channels were removed to make it lighter. Since VPT (https://vizgen.github.io/vizgen-postprocessing/) was run on this crop, it gave the latest file format/structure into a dedicated subfolder that I called vpt-run.
Added to
vizgen_merscope
:download.py
: download and unzip a file from Zenodoto_zarr.py
: make a zarr folder (using the merfish reader in spatialdata-io, see PR: https://github.com/scverse/spatialdata-io/pull/33)NB: for ease of sharing, this is a very small crop of a public vizgen image, and some channels were removed to make it lighter. Since VPT (https://vizgen.github.io/vizgen-postprocessing/) was run on this crop, it gave the latest file format/structure into a dedicated subfolder that I called
vpt-run
.