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giovp / spatialdata-sandbox

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Merfish Xenium radii fail #36

Closed melonora closed 5 months ago

melonora commented 6 months ago

When converting to zarr currently these datasets fail because not all radii are above 0. @LucaMarconato

LucaMarconato commented 6 months ago

Thanks for reporting. Does this affectr the merfish or the xenium data? In the case of merfish I compute the radius here: https://github.com/giovp/spatialdata-sandbox/blob/ceb8eddc1fdc441b33fcd84d4f3e7c734bf84b92/merfish/download.py#L120.

LucaMarconato commented 6 months ago

So are some radii 0? In that case I'd drop the cells inside the download.py script.

LucaMarconato commented 5 months ago

Fixed with https://github.com/giovp/spatialdata-sandbox/pull/37.