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girder / large_image

Python modules to work with large multiresolution images.
http://girder.github.io/large_image/
Apache License 2.0
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cuCIM tile source #789

Open cooperlab opened 2 years ago

cooperlab commented 2 years ago

cuCIM read_region() is a highly optimized routine for reading from TIFF-like whole-slide images including svs. We should incorporate cuCIM as a tile source.

https://pypi.org/project/cucim/

manthey commented 2 years ago

I think the main difficulty here is going to be generalizing the installation of cuCIM. For all of our other tile sources, we build a python wheel to facilitate the process. Doing so for cuCIM is probably much harder as they have different packages based on GPU drivers.

cooperlab commented 2 years ago

We can discuss this with the NVIDIA team at our next meeting.

manthey commented 8 months ago

It looks like pip install cucim is now sufficient; the cupy cuda extensions appear to be for some of the cucim image manipulation features.