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girirajanlab / CN_Learn

CN-Learn
GNU General Public License v3.0
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please create sample gold standard file #8

Open martiliasf opened 4 years ago

martiliasf commented 4 years ago

your information in the readme is lacking. For instance, I had to use git rep CNV_TYPE to try and figure out whether it needs DEL DUP or 0 1 or 1 2 etc. I think its DUP DEL based on

scripts/calc_valdata_overlap.sh:for CNV_TYPE in "DUP" "DEL";

girirajanlab commented 4 years ago

For now, we have added a note indicating that CNV_TYPE can only take two possible values (DEL & DUP) as input values. We will provide actual sample rows of gold standard input shortly.