gitter-lab / SINGE

Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
MIT License
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Command line interface for SINGE #17

Closed agitter closed 5 years ago

agitter commented 5 years ago

We would like to have a script that shows how to run SCINGE from the command line. It will provide all of the input data files and GLG hyperparmeters. A demo script will reproduce the test run in SCINGE_Example.m.

Initially this will assume that all GLG runs are done locally. We can parallelize the GLG runs for high-thoughput computing (#6) as a later step.