gitter-lab / SINGE

Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
MIT License
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Prepare SINGE Docker container #23

Closed agitter closed 5 years ago

agitter commented 5 years ago

@atuldeshpande this pull request is ready for review. It takes partial steps toward #18, but the Docker image should be considered unstable. We'll likely change it after merging #17 and finalize it once we have the next compiled version of SINGE ready to release.

The changes here run the compiled example code in a custom Docker image that has the MATLAB runtime, conda test environment, and compiled executable. The Docker build process is done manually from a local machine. Eventually, this possibly could be automated. It is complicated because we need to locally compile the MATLAB code anyway.

The image is located at https://hub.docker.com/r/agitter/singe