Add user guidelines to the readme and manuscript

gitter-lab / SINGE

Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data

MIT License

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Add user guidelines to the readme and manuscript #30

Closed agitter closed 4 years ago

agitter commented 5 years ago

One example is that we do not recommend lambda=0 with large datasets. We can also recommend more strongly that SINGE is run with an ensemble of many different hyperparameters.

agitter commented 4 years ago

As part of this, we should populate default_hyperparameters.txt with reasonable values and also explain when a user may want to change those values.