agitter
commented
11 months ago Here is the full environment in the Ubuntu GitHub actions job in case we need to pin additional packages in the future:
# packages in environment at /usr/share/miniconda3/envs/nn4dms:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main
_openmp_mutex 5.1 1_gnu
_tflow_select 2.3.0 mkl
absl-py 0.15.0 pyhd3eb1b0_0
argon2-cffi 20.1.0 py36h27cfd23_1
astor 0.8.1 py36h06a4308_0
async_generator 1.10 pyhd3eb1b0_0
attrs 21.4.0 pyhd3eb1b0_0
backcall 0.2.0 pyhd3eb1b0_0
biopandas 0.2.7 pyh9f0ad1d_1 conda-forge
blas 1.0 openblas
bleach 4.1.0 pyhd3eb1b0_0
brotlipy 0.7.0 py36h27cfd23_1003
c-ares 1.19.1 h5eee18b_0
ca-certificates 2023.08.22 h06a4308_0
certifi 2021.5.30 py36h06a4308_0
cffi 1.14.6 py36h400218f_0
charset-normalizer 2.0.4 pyhd3eb1b0_0
coverage 5.5 py36h27cfd23_2
cryptography 35.0.0 py36hd23ed53_0
cycler 0.11.0 pyhd3eb1b0_0
cython 0.29.24 py36h295c915_0
dataclasses 0.8 pyh4f3eec9_6
dbus 1.13.18 hb2f20db_0
decorator 4.4.2 pyhd3eb1b0_0
defusedxml 0.7.1 pyhd3eb1b0_0
entrypoints 0.3 py36_0
expat 2.5.0 h6a678d5_0
fontconfig 2.14.1 h52c9d5c_1
freetype 2.12.1 h4a9f257_0
gast 0.2.2 py36_0
giflib 5.2.1 h5eee18b_3
glib 2.69.1 h4ff587b_1
google-pasta 0.2.0 pyhd3eb1b0_0
grpcio 1.36.1 py36h2157cd5_1
gst-plugins-base 1.14.1 h6a678d5_1
gstreamer 1.14.1 h5eee18b_1
h5py 2.10.0 py36hd6299e0_1
hdf5 1.10.6 hb1b8bf9_0
icu 58.2 he6710b0_3
idna 3.3 pyhd3eb1b0_0
importlib-metadata 4.8.1 py36h06a4308_0
importlib_metadata 4.8.1 hd3eb1b0_0
ipykernel 5.3.4 py36h5ca1d4c_0
ipython 7.16.1 py36h5ca1d4c_0
ipython_genutils 0.2.0 pyhd3eb1b0_1
jedi 0.17.2 py36h06a4308_1
jinja2 3.0.3 pyhd3eb1b0_0
joblib 1.0.1 pyhd3eb1b0_0
jpeg 9e h5eee18b_1
json5 0.9.6 pyhd3eb1b0_0
jsonschema 3.2.0 pyhd3eb1b0_2
jupyter_client 7.1.2 pyhd3eb1b0_0
jupyter_core 4.8.1 py36h06a4308_0
jupyterlab 2.2.8 py_0 conda-forge
jupyterlab_pygments 0.1.2 py_0
jupyterlab_server 1.2.0 py_0
keras-applications 1.0.8 py_1
keras-preprocessing 1.1.2 pyhd3eb1b0_0
kiwisolver 1.3.1 py36h2531618_0
lcms2 2.12 h3be6417_0
ld_impl_linux-64 2.38 h1181459_1
lerc 3.0 h295c915_0
libdeflate 1.17 h5eee18b_1
libffi 3.3 he6710b0_2
libgcc-ng 11.2.0 h1234567_1
libgfortran-ng 7.5.0 ha8ba4b0_17
libgfortran4 7.5.0 ha8ba4b0_17
libgomp 11.2.0 h1234567_1
libllvm10 10.0.1 hbcb73fb_5
libopenblas 0.3.18 hf726d26_0
libpng 1.6.39 h5eee18b_0
libprotobuf 3.17.2 h4ff587b_1
libsodium 1.0.18 h7b6447c_0
libstdcxx-ng 11.2.0 h1234567_1
libtiff 4.5.1 h6a678d5_0
libuuid 1.41.5 h5eee18b_0
libwebp 1.2.4 h11a3e52_1
libwebp-base 1.2.4 h5eee18b_1
libxcb 1.15 h7f8727e_0
libxml2 2.9.14 h74e7548_0
llvmlite 0.34.0 py36h269e1b5_4
lz4-c 1.9.4 h6a678d5_0
markdown 3.3.4 py36h06a4308_0
markupsafe 2.0.1 py36h27cfd23_0
matplotlib 3.3.1 0
matplotlib-base 3.3.1 py36h817c723_0
mistune 0.8.4 py36h7b6447c_0
nbclient 0.5.3 pyhd3eb1b0_0
nbconvert 6.0.7 py36_0
nbformat 5.1.3 pyhd3eb1b0_0
ncurses 6.4 h6a678d5_0
nest-asyncio 1.5.1 pyhd3eb1b0_0
networkx 2.5.1 pyhd3eb1b0_0
notebook 6.4.3 py36h06a4308_0
numba 0.51.2 py36h0573a6f_1
numpy 1.16.4 py36h99e49ec_0
numpy-base 1.16.4 py36h2f8d375_0
olefile 0.46 pyhd3eb1b0_0
openssl 1.1.1w h7f8727e_0
packaging 21.3 pyhd3eb1b0_0
pandas 1.1.1 py36he6710b0_0
pandoc 2.12 h06a4308_3
pandocfilters 1.5.0 pyhd3eb1b0_0
parso 0.7.0 py_0
pcre 8.45 h295c915_0
pexpect 4.8.0 pyhd3eb1b0_3
pickleshare 0.7.5 pyhd3eb1b0_1003
pillow 8.3.1 py36h5aabda8_0
pip 21.2.2 py36h06a4308_0
prometheus_client 0.13.1 pyhd3eb1b0_0
prompt-toolkit 3.0.20 pyhd3eb1b0_0
protobuf 3.17.2 py36h295c915_0
ptyprocess 0.7.0 pyhd3eb1b0_2
pycparser 2.21 pyhd3eb1b0_0
pygments 2.11.2 pyhd3eb1b0_0
pynndescent 0.4.8 pyh9f0ad1d_1 conda-forge
pyopenssl 22.0.0 pyhd3eb1b0_0
pyparsing 3.0.4 pyhd3eb1b0_0
pyqt 5.9.2 py36h05f1152_2
pyrsistent 0.17.3 py36h7b6447c_0
pysocks 1.7.1 py36h06a4308_0
python 3.6.12 hcff3b4d_2
python-dateutil 2.8.2 pyhd3eb1b0_0
python_abi 3.6 2_cp36m conda-forge
pytz 2021.3 pyhd3eb1b0_0
pyyaml 5.3.1 py36h7b6447c_1
pyzmq 22.2.1 py36h295c915_1
qt 5.9.7 h5867ecd_1
readline 8.2 h5eee18b_0
requests 2.27.1 pyhd3eb1b0_0
scikit-learn 0.23.2 py36h0573a6f_0
scipy 1.5.2 py36habc2bb6_0
seaborn 0.10.1 py_0
send2trash 1.8.0 pyhd3eb1b0_1
setuptools 58.0.4 py36h06a4308_0
shortuuid 1.0.1 py36h5fab9bb_4 conda-forge
sip 4.19.8 py36hf484d3e_0
six 1.16.0 pyhd3eb1b0_1
sqlite 3.41.2 h5eee18b_0
tbb 2021.8.0 hdb19cb5_0
tensorboard 1.14.0 py36hf484d3e_0
tensorflow 1.14.0 mkl_py36h2526735_0
tensorflow-base 1.14.0 mkl_py36h7ce6ba3_0
tensorflow-estimator 1.14.0 py_0
termcolor 1.1.0 py36h06a4308_1
terminado 0.9.4 py36h06a4308_0
testpath 0.5.0 pyhd3eb1b0_0
threadpoolctl 2.2.0 pyh0d69192_0
tk 8.6.12 h1ccaba5_0
tornado 6.1 py36h27cfd23_0
tqdm 4.48.2 py_0
traitlets 4.3.3 py36h06a4308_0
typing_extensions 4.1.1 pyh06a4308_0
umap-learn 0.4.0 py36h9f0ad1d_0 conda-forge
urllib3 1.26.8 pyhd3eb1b0_0
wcwidth 0.2.5 pyhd3eb1b0_0
webencodings 0.5.1 py36_1
werkzeug 2.0.3 pyhd3eb1b0_0
wheel 0.37.1 pyhd3eb1b0_0
wrapt 1.12.1 py36h7b6447c_1
xz 5.4.2 h5eee18b_0
yaml 0.2.5 h7b6447c_0
zeromq 4.3.4 h2531618_0
zipp 3.6.0 pyhd3eb1b0_0
zlib 1.2.13 h5eee18b_0
zstd 1.5.5 hc292b87_0
Installing the environment with mamba instead of conda fails, which may explain the behavior reported in #6. Nevertheless. I'm pinning the
absl-pythat caused problems in that issue. conda installed 0.15.0, which is the last 0.x version before the 1.0.0 release per https://pypi.org/project/absl-py/#historyCloses #6