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gjospin / PhyloSift

Phylogenetic and taxonomic analysis for genomes and metagenomes
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Calculate edge PCA in amphora2 #20

Closed koadman closed 12 years ago

koadman commented 12 years ago

Based on KR distances among samples, one can calculate an edge principle components analysis which, among other things, can highlight which groups of organisms contribute the greatest difference between microbial communities. amphora2 should have an easy way to invoke guppy to do this for a group of samples.

koadman commented 12 years ago

this works, now need to come up with a nice way of looking at the results

koadman commented 12 years ago

committed to master with 20e521dc53e999a04c92d67fe427b842d8b54305