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gjospin / PhyloSift

Phylogenetic and taxonomic analysis for genomes and metagenomes
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Alignment file parse error #469

Closed ghost closed 9 years ago

ghost commented 9 years ago

Hello,

I am a student and I would like to use PhyloSift for a class project. Unfortunately, when I attempted to run the Tutorial_data, the error below was returned. I noticed the BlastDir was fully populated, the TreeDir was empty, and the AlignDir was missing some files, as if it had stopped midway.

The PhyloSift program with Tutorial_data was able to run successfully on my laptop, which is how I know what the directories are supposed to look like, but I would like to run PhyloSift on a cluster, and I can't figure out why this error occurs when I do.

Please let me know if you have any ideas, and thank you. Any help or advice would be much appreciated!

Alignment file parse error: parse failed (line 31220): didn't find // at end of alignment

ghost commented 9 years ago

Actually, I have been able to solve my problem. Thanks.