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gjospin / PhyloSift

Phylogenetic and taxonomic analysis for genomes and metagenomes
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PhyloSift error running (Can't locate App/Cmd/Setup.pm in @INC) #487

Open ghost opened 6 years ago

ghost commented 6 years ago

After downloading and unzipping the folder, I ran the first command with the test dataset and having the following error:

[mdimdadi@rameshgoel PhyloSift]$ bin/phylosift all --output=results --paired tutorial_data/HMP_1.fastq.gz tutorial_data/HMP_2.fastq.gz

[mdimdadi@rameshgoel PhyloSift]$ Can't locate App/Cmd/Setup.pm in @INC (@INC contains: /home/mdimdadi/Downloads/PhyloSift/bin/../lib /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /home/mdimdadi/Downloads/PhyloSift/bin/../lib/Phylosift.pm line 2. BEGIN failed--compilation aborted at /home/mdimdadi/Downloads/PhyloSift/bin/../lib/Phylosift.pm line 2. Compilation failed in require at bin/phylosift line 6. BEGIN failed--compilation aborted at bin/phylosift line 6.

LoryBkr commented 5 years ago

Hello @mdimdadi, I have the same issue but I don't know how to fix it. Do you have any idea now ?

jolespin commented 4 years ago

I also have the same error...

MarcelaHer commented 4 years ago

Hi, I also have the same error! phylosift -h Can't locate App/Cmd/Setup.pm in @INC (@INC contains: /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 . /gpfs/software/ada/PhyloSift-1.0.0_01/bin/../lib) at /.../PhyloSift-1.0.0_01/bin/../lib/Phylosift.pm line 2. BEGIN failed--compilation aborted at /../lib/Phylosift.pm line 2. Compilation failed in require at /.../bin/phylosift line 7. BEGIN failed--compilation aborted at /.../PhyloSift-1.0.0_01/bin/phylosift line 7.

jolespin commented 4 years ago

This package seems to be dead. The authors haven’t touched the repository in years and key resource files on their website are missing. I would find another option that’s actively maintained.