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gjospin / PhyloSift

Phylogenetic and taxonomic analysis for genomes and metagenomes
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running aborted #499

Open bonniethesheng opened 5 years ago

bonniethesheng commented 5 years ago

Hi, I submitted the data to slurm for running on PhyloSift. However, I got: pplacer: loadlocale.c:130: _nl_intern_locale_data: Assertion cnt < (sizeof (_nl_value_type_LC_TIME) / sizeof (_nl_value_type_LC_TIME[0]))' failed. Aborted pplacer: loadlocale.c:130: _nl_intern_locale_data: Assertioncnt < (sizeof (_nl_value_type_LC_TIME) / sizeof (_nl_value_type_LC_TIME[0]))' failed. Aborted pplacer: loadlocale.c:130: _nl_intern_locale_data: Assertion `cnt < (sizeof (_nl_value_type_LC_TIME) / sizeof (_nl_value_type_LC_TIME[0]))' failed. Aborted

Does anyone know what I can do? Thank you very much!

gjospin commented 5 years ago

Oh strange I’ve never seen that error. I would recommend trying to compile and install pplacer on its own and replacing the copy distributed with PS. That would be in the bin folder inside the phylosift directory.( If you were using a Mac, then you would add the new executable to the osx directory instead). You could add it to your PATH as well.

Could it be possible the precompiled version old enough to not like the newer libraries?

https://matsen.fhcrc.org/pplacer/

Sent from my iPhone

On Mar 19, 2019, at 11:39 PM, bonniethesheng notifications@github.com wrote:

loadlocale.c:130: _nl_intern_locale_data: Assertion `cnt < (sizeof (_nl_value_type_LC_TIME) / sizeof (_nl_value_type_LC_TIME[0]))' failed.