Reading list for reproducibility/generalizability/replicability/etc....
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Paper: Prediction of Membrane Transport Proteins and Their Substrate Specificities Using Primary Sequence Information #55
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gkiar opened 4 years ago
URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100278 (replicated by Hamid in https://github.com/gkiar/reproducibility-bioinfo)
This paper does...
Develops a predictive model (based upon SVM) to identify transporting substrates associated with membrane transport proteins.
Curated a dataset that categorizes transport proteins based on their transported substrates.
(Data compilation): Is it reasonable that they remove those which are excessively similar to one another?
(don't have a ton of notes... seems reasonably straight forward)