AnnotateLocus.py issues

[leaskimo]

Had a few issues with AnnotateLocus.py First I had to remove lines in the Annotations_Path file because I kept getting this: Traceback (most recent call last): File "AnnotateLocus.py", line 54, in current_annotation = open(annotations.strip()) IOError: [Errno 21] Is a directory: 'Functional_Annotations/'

Now I am getting the error below:

Traceback (most recent call last): File "AnnotateLocus.py", line 64, in left_int.append(int(site[1])) ValueError: invalid literal for int() with base 10: 'h'

What could it mean?

[JulieGb]

Hi leaskimo, Did you fix your issue ? Because I've the same : "Traceback (most recent call last): File "AnnotateLocus.py", line 54, in current_annotation = open(annotations.strip()) IOError: [Errno 21] Is a directory: 'Functional_Annotations/'"

Thank you

[SitaZhou]

Hi, The line in the Annotations_Path should be the path of your annotation file, including the file name. And the second error: Traceback (most recent call last): File "AnnotateLocus.py", line 64, in left_int.append(int(site[1])) ValueError: invalid literal for int() with base 10: 'h' I guess it might due to the improper delimiter of your file .

[xxz1482]

Hi Guys, My error was like: Traceback (most recent call last): File "AnnotateLocus.py", line 55, in current_annotation = open(annotations.strip()) IOError: [Errno 2] No such file or directory: 'l\x1b\x01\xb3/\xef\xba\xaa\xfa\xea\xff?\xea' Any clues/suggestions?

Thanks in advance!