output:
Running PAINTOR in MCMC mode
Number of chains: 5
Samples per chain: 50000
Burn in: 5000
Proportion of LD variance kept when performing truncated SVD for estimating N*h2g: 0.95
Model annotations: annot1,annot2
Reading in files for: locus1
......
Warning! The estimated N*h2_g,local for locus locus1 is: 699.397
This may potentially indicate mismatch/error in the LD-matrix
......
Enrichment estimates at iteration 15 is :
2.42765
-6.69577
1.67617
-2.38747
20
-0.288289
17.3398
-6.89959
11.79
-20
14.4906
4.61102
0.670335
Average log bayes factor: 1.26242e+06
Hello， when I run paintor in mcmc mode there is no output, but no error message.Could you tell me how to solve the problem?
code: PAINTOR -input input.files -Zhead ZSCORE -LDname ld -mcmc -in ./locus_input/ -out ./paintor/ -annotations annot1,annot2
output: Running PAINTOR in MCMC mode Number of chains: 5 Samples per chain: 50000 Burn in: 5000 Proportion of LD variance kept when performing truncated SVD for estimating N*h2g: 0.95 Model annotations: annot1,annot2
Reading in files for: locus1 ......
Warning! The estimated N*h2_g,local for locus locus1 is: 699.397 This may potentially indicate mismatch/error in the LD-matrix ...... Enrichment estimates at iteration 15 is : 2.42765 -6.69577 1.67617 -2.38747 20 -0.288289 17.3398 -6.89959 11.79 -20 14.4906 4.61102 0.670335 Average log bayes factor: 1.26242e+06
Any feedback would be appreciated.