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gkichaev / PAINTOR_V3.0

Fast, integrative fine mapping with functional data
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tophit's posterior probability is 0 #65

Open akhilpampana opened 1 year ago

akhilpampana commented 1 year ago

Hello, I am trying to run paintor fine-mapping and got results for 4 loci. Upon checking the results, I dont see top hits that are present in the dataset having a posterior probability of 1 or greater. Is there a way to fix this issue?

Thank you so much for the time and looking forward to hearing from you.

Regards Akhil

wangmengdie-a commented 1 year ago

Hello, I would like to ask you, what species did you do the fine positioning on? Is it for humans? Or of other animals?

akhilpampana commented 1 year ago

I am working on human population.

wangmengdie-a commented 1 year ago

Hello, I also want to ask, have you seen this error of mine?

Running PAINTOR with full enumeration Maximum number of causals per locus: 3 Proportion of LD variance kept when performing truncated SVD for estimating N*h2g: 0.95 Model annotations:

Floating point exception

akhilpampana commented 1 year ago

I think its a dimensions error. can you check the dimensions of both? It will give you an answer.

wangmengdie-a commented 1 year ago

Thank you very much！

王梦蝶 @.***

 

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I think its a dimensions error. can you check the dimensions of both? It will give you an answer.

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